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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002664 ID=TCONS_00002664|Name=TCONS_00002664|organism=Clytia hemisphaerica|type=transcript|length=1812bp
CAGTGTAGGACTAAATTTTAATCATTCCTTCCAATTTTTCCATGCATCGT
TTTGGAATGTCCTATCGTGAAAATGAAATCTGGTTTCAACAATGTGATTC
AACAATAGATACACTGTTAAACTTGTCATCATTGTCCATAGTAAGCATAT
CATCAACGAAATGCTTATGCCCAAGAGGTGCCAAACTCACTGGTTGGATG
ACATGTGAATCTAAAGGCTGCAATACAAATCAAACTCAACCATCAAATAT
TAACAGAAAACGTAGAAACAGTAAAAGTAGAAGACATTCGAGTAGCTCGG
TACTAAGCTATCAAAAAGATTGCACCAACTGCCGTAGTTTAACAAAGAAT
TGTTCACCAAACTGTCTAAAACGCAAACCATTTGTACATTATAATGACAC
TGGTTCTTACATAAAGGTCTACAGAGATACAAACAGTACTGGCAAAAGAT
TGGACATGTCTGGTGATCATCTTGCAGACAAAGAATTATCACGTGATATC
AACCAAGCCAATCAAATGAAGGAATCGCCAACTGATACTGTCAGTCTTAT
CAACGAAATAAGGTGCCAACTAACAAAGCTAGAAGAAAAAAGTGGACCTT
CTCCTTCCCAAAAACCACCTCAATCGAAACCAAATATCTTACGAAAACAA
ATGAGCACCTCAGCAATACACTCTAAATATCGTCTACAAAATCTTCAAAC
AGAAGGAGAGACAACCATTCTGAAGCACCGACCCCACTCAACACCATCCA
TTATGGTCGACACACACTCCTCCACTGGGTTCTTATCTTCGACCACACCC
TTAATTATGATTGGAAAAAAGATTCATACATAGAAGAATTAGCGAAAGGG
TGAATGGCTGTCAATCAGTCGACAAGAAGTTTCAAACGTTGATAAATATT
ATGATGTTAAAGTTCAAAATTCATAAATGAATTCAAGTAAAGCAAGAGAC
CAAATTTCGTGCTGACAACCTCTAAAAAgcCGATTGGGATTTCAAGCACA
CGAATAAATAATTCCGTGTCCGTAATACACTATTCATCGATTCATCGGAT
GTCATAAACCCGGCCATATACTCACCAACTGCTAATTATTTTCAGCGTCG
AAGAATTTATGTGATTCTTGGATATTCCGATTATTCTTCtatctaaaaaa
aatacaaaatgctTGAAAACACTCCTGTCTTagtgccccggtggaacctt
ttccctcagtggggatgaaaatttctatcgaaatcccaatggggatagaa
aatcagCTCAGcgtttccagctcaaaaattccagtggggatggttttgga
gtccaattttttccattcaattttcaatggggatagaatcatagggcaat
ttcccagcggggttgaaaatgtagggtattttttccaccggggacgattt
tttggcctatttttccaccggggtgggggggtccaccgggtctgtgacac
aggggtgtttgaAATGACAGTAGTAAAAACAATACCATCTATAATTTACA
TTGGCGATGTCTTTAGCTGGTTGAATATTTTGTGGTTATTGGTGTAATAG
TTTCAGGGTTTAAAAGAGAAGCTGAACAGTCTTATCTCCAGCTGTAAACC
TATATTCACTTGCATCACCTTCTGATTTTACTTATGGGCCGTTGGTTGGT
AAAATCACGTTTGATGAGTACGAAAAATGAACTAAGGGACtgggaaaaag
tttttgtttattataTAGGGGACtaaatttttgtcttttttattttgcaa
aaagtttatttttcctCTTTGTATTATTcccaaattttgtattttttatc
tATATTTCTAGC Run BLAST on NCBI protein sequence of TCONS_00002664-protein >TCONS_00002664-protein ID=TCONS_00002664-protein|Name=TCONS_00002664-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MHRFGMSYRENEIWFQQCDSTIDTLLNLSSLSIVSISSTKCLCPRGAKLT
GWMTCESKGCNTNQTQPSNINRKRRNSKSRRHSSSSVLSYQKDCTNCRSL
TKNCSPNCLKRKPFVHYNDTGSYIKVYRDTNSTGKRLDMSGDHLADKELS
RDINQANQMKESPTDTVSLINEIRCQLTKLEEKSGPSPSQKPPQSKPNIL
RKQMSTSAIHSKYRLQNLQTEGETTILKHRPHSTPSIMVDTHSSTGFLSS
TTPLIMIGKKIHT Run BLAST on NCBI transcript from alignment at sc0000021:247785..251875- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002664 ID=TCONS_00002664|Name=TCONS_00002664|organism=Clytia hemisphaerica|type=transcript|length=4091bp|location=Sequence derived from alignment at sc0000021:247785..251875- (Clytia hemisphaerica)
CAGTGTAGGACTAAATTTTAATCATTCCTTCCAATTTTTCCATGCATCGT
TTTGGAATGTCCTATCGTGAAAATGAAATCTGGTTTCAACAATGTGATTC
AACAATAGATACACTGTTAAACTTGTCATCATTGTCCATAGTAAGCATAT
CATCAACGAAATGCTTATGCCCAAGAGGTGCCAAACTCACTGGTTGGATG
ACATGTGAATCTAAAGGCTGCAATACAAATCAAACTCAACCATCAAATAT
TAACAGAAAACGTAGAAACAGTAAAAGTAGAAGACATTCGAGTAGCTCGG
TACTAAGCTATCAAAAAGATTGCACCAACTGCCGTAGTTTAACAAAGAAT
TGTTCACCAAACTGTCTAAAACGCAAACCATTTGTACATTATAATGACAC
TGGTTCTTACATAAAGGTCTACAGAGATACAAACAGTACTGGCAAAAGAT
TGGACATGTCTGGTGATCATCTTGCAGACAAAGAATTATCACGTGATATC
AACCAAGCCAATCAAATGAAGGAATCGCCAACTGATACTGTCAGTCTTAT
CAACGAAATAAGGTGATTGACCGTGTTTTTTTCTCATATCCAGTATCAAG
TGAGAACACTTTAAAGCGAGTGGAGGATAAAGTAGAGCTTAGAGCCACCA
AGGGCTTCTACTTGTTTTAGTGCTAATAGGGTTTTAGTTGTATCTAACAA
ACGGCTATCGCGCTTGCCATTGTATTGTTTATTTCTAAAAAGAAGGGTAA
TCAATCAATTCTTTCTTTTCTTTGTTATTTCTTAATTATTTGGGGATAAA
TCATTTATCATCATTAGCAAATTTAAACTATATTACACCCCCTTCTCACA
GACCCGGTAGGATTTTTTCAGCCAGTGGGGATAAAAATAACTGGCTGAAA
CACGATGGGAATTGTTATTCCGATATTTTTAATGGCTTGGGATTTCAATT
CTTTTGTAAGTCAGAAAATTCAGTGGGGATGGGAAAAAAGCATAGTATTT
CGAAGTGAGGATTGGTTTGTTTGATTATTTTCAATGGGGACAAAAATTGG
AGGATAATTTTCCACCGGGACAATATTTTGGCGAAAAGAGGGTGAGAAGA
GGGTGTTCTATTAAAGTCCACTTTCTTTCTTGTTTTTGTCTGTAGGTGCC
AACTAACAAAGCTAGAAGAAAAAAGTGGACCTTCTCCTTCCCAAAAACCA
CCTCAATCGAAACCAAATATCTTACGAAAACAAATGAGCACCTCAGCAAT
ACACTCTAAATATCGTCTACAAAATCTTCAAACAGAAGGAGAGACAACCA
TTCTGAAGCACCGACCCCACTCAACACCATCCATTATGGTCGACACACAC
TCCTCCACTGGGTTCTTATCTTCGACCACACCCTTAATTATGATTGGAAA
AAAGATTCATACATAGAAGAATTAGCGAAAGGGTAAGTGAAAATAATACT
ACAGGATCAGGTAGCCTTTTTTCTAACGAGACTTATACATGTAATGTGTT
ATGTACAAATTATGACAAAGGAAGCATCGGGGAGGCACTCCGGCAAAATT
GGGTACGGGGACATGCTGCTGGTCAGGGTCCCTTTTTTTGGGTTCTTAAG
ATATATGGCAGGGTCCCAAATTTACTAATTTTCAAGATATGTATCTGACA
GGGTTTTTTGGACAATTTTCGGAGTAGAAATTAGAAATTCTTTCAACTCT
TCGTCAACATTAAATCATTTGTGATTTAGATTTTTAAATCTCTCTCATTT
TTGCCACTTTCCAGGTTAGAATGGGAAAAAATAGATTTTTCTTTTTGACA
GGGTCCCAAATTTACCAAACATTCATATCTGACAGGGTCCACTTTTCAAA
CTCCAGCGGCACGAAACGTACAGTGCCCACCCCGGGGGAAGCATGTTTAA
CTAGTTCCTAAAGAGTATTTTAAATCACTTAGCAACTAGTTATTATACCG
CAGATACCAGGGGGTACTAGGGTTGGCGAGTGAGGGGTATGTGCGGATGG
GACCTCCAAAAACCGACCCTTAGAGAGACTTTAGTGAAAAATGTTCTTCG
ATTTTTGAAAAAAGTCTTACCCTTAGAGAGACTTATTTACACTTTTTTCT
TTCAAAATCTAAAAAATTTCCTAAAAATCGTGATTTTTCCGACTCTTAGA
GAGACTTTGAAAGGTGAAAAAGCCGACCCTTACAGTCCGCACATACCCAG
CACCTATTTTTGCCTAATTACCCCTCCCCCCCCCCCCCCCCCCCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCGGCGCAG
GTAACAATATTTACAGAGATAAATACAAAGGTTTTATACATTCCAGGTGA
ATGGCTGTCAATCAGTCGACAAGAAGTTTCAAACGTTGATAAATATTATG
ATGTTAAAGTTCAAAATTCATAAATGAATTCAAGTAAAGCAAGAGACCAA
ATTTCGTGCTGACAACCTCTAAAAAGTAAGACAAACTATCCCCAGCGAAA
CGGGTTGCTCGTATTGTTTTACCTTAAGAAAAGAATTTTTTATGCAATTT
GGCGGAATTTATTTTGGCGAACGACCCATTTTTGTTCAATAATTTAGCTG
AAAAAAAAGAGGAAAAAAGGGGTTTTTAGGAGAAATAGAGACTAAATTGA
AAGAAATTTAAATTTGGCGAATGGACTTAATAAATTTCTTTCCGCCAAAA
TTTCTTCCTACTTTAAGGGTATAGACTTTTTACTATACTACCTGCAGTGG
TTTAGTTGTAGAGGTCTTCTAAGATAAAAGACCTATTGAAAACCTCGTCA
ATCATTTGACCCTTTGAAATATCATTATTTAGCAGTCTAAGGGGGTACTG
CCCTAATAAAATGGTCAAAACATGTTACTAATTATTTTATCTTTTATTTC
AATTTAGGCCGATTGGGATTTCAAGCACACGAATAAATAATTCCGTGTCC
GTAATACACTATTCATCGATTCATCGGATGTCATAAACCCGGCCATATAC
TCACCAACTGCTAATTATTTTCAGCGTCGAAGAATTTATGTGATTCTTGG
ATATTCCGATTATTCTTCTATCTAAAAAAAATACAAAATGCTTGAAAACA
CTCCTGTCTTAGTGCCCCGGTGGAACCTTTTCCCTCAGTGGGGATGAAAA
TTTCTATCGAAATCCCAATGGGGATAGAAAATCAGCTCAGCGTTTCCAGC
TCAAAAATTCCAGTGGGGATGGTTTTGGAGTCCAATTTTTTCCATTCAAT
TTTCAATGGGGATAGAATCATAGGGCAATTTCCCAGCGGGGTTGAAAATG
TAGGGTATTTTTTCCACCGGGGACGATTTTTTGGCCTATTTTTCCACCGG
GGTGGGGGGGTCCACCGGGTCTGTGACACAGGGGTGTTTGAAATGACAGT
AGTAAAAACAATACCATCTATAATTTACATTGGCGATGTCTTTAGCTGGT
TGAATATTTTGTGGTTATTGGTGTAATAGTTTCAGGGTTTAAAAGAGAAG
CTGAACAGTCTTATCTCCAGCTGTAAACCTATATTCACTTGCATCACCTT
CTGATTTTACTTATGGGCCGTTGGTTGGTAAAATCACGTTTGATGAGTAC
GAAAAATGAACTAAGGGACTGGGAAAAAGTTTTTGTTTATTATATAGGGG
ACTAAATTTTTGTCTTTTTTATTTTGCAAAAAGTTTATTTTTCCTCTTTG
TATTATTCCCAAATTTTGTATTTTTTATCTATATTTCTAGC Coding sequence (CDS) from alignment at sc0000021:247785..251875- >TCONS_00002664 ID=TCONS_00002664|Name=TCONS_00002664|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0000021:247785..251875- (Clytia hemisphaerica)
GTGCCAACTAACAAAGCTAGAAGAAAAAAGTGGACCTTCTCCTTCCCAAA
AACCACCTCAATCGAAACCAAATATCTTACGAAAACAAATGAGCACCTCA
GCAATACACTCTAAATATCGTCTACAAAATCTTCAAACAGAAGGAGAGAC
AACCATTCTGAAGCACCGACCCCACTCAACACCATCCATTATGGTCGACA
CACACTCCTCCACTGGGTTCTTATCTTCGACCACACCCTTAATTATGATT
GGAAAAAAGATTCATACATAGATGCATCGTTTTGGAATGTCCTATCGTGA
AAATGAAATCTGGTTTCAACAATGTGATTCAACAATAGATACACTGTTAA
ACTTGTCATCATTGTCCATAGTAAGCATATCATCAACGAAATGCTTATGC
CCAAGAGGTGCCAAACTCACTGGTTGGATGACATGTGAATCTAAAGGCTG
CAATACAAATCAAACTCAACCATCAAATATTAACAGAAAACGTAGAAACA
GTAAAAGTAGAAGACATTCGAGTAGCTCGGTACTAAGCTATCAAAAAGAT
TGCACCAACTGCCGTAGTTTAACAAAGAATTGTTCACCAAACTGTCTAAA
ACGCAAACCATTTGTACATTATAATGACACTGGTTCTTACATAAAGGTCT
ACAGAGATACAAACAGTACTGGCAAAAGATTGGACATGTCTGGTGATCAT
CTTGCAGACAAAGAATTATCACGTGATATCAACCAAGCCAATCAAATGAA
GGAATCGCCAACTGATACTGTCAGTCTTATCAACGAAATAAGGTGCCAAC
TAACAAAGCTAGAAGAAAAAAGTGGACCTTCTCCTTCCCAAAAACCACCT
CAATCGAAACCAAATATCTTACGAAAACAAATGAGCACCTCAGCAATACA
CTCTAAATATCGTCTACAAAATCTTCAAACAGAAGGAGAGACAACCATTC
TGAAGCACCGACCCCACTCAACACCATCCATTATGGTCGACACACACTCC
TCCACTGGGTTCTTATCTTCGACCACACCCTTAATTATGATTGGAAAAAA
GATTCATACATAGATGCATCGTTTTGGAATGTCCTATCGTGAAAATGAAA
TCTGGTTTCAACAATGTGATTCAACAATAGATACACTGTTAAACTTGTCA
TCATTGTCCATAGTAAGCATATCATCAACGAAATGCTTATGCCCAAGAGG
TGCCAAACTCACTGGTTGGATGACATGTGAATCTAAAGGCTGCAATACAA
ATCAAACTCAACCATCAAATATTAACAGAAAACGTAGAAACAGTAAAAGT
AGAAGACATTCGAGTAGCTCGGTACTAAGCTATCAAAAAGATTGCACCAA
CTGCCGTAGTTTAACAAAGAATTGTTCACCAAACTGTCTAAAACGCAAAC
CATTTGTACATTATAATGACACTGGTTCTTACATAAAGGTCTACAGAGAT
ACAAACAGTACTGGCAAAAGATTGGACATGTCTGGTGATCATCTTGCAGA
CAAAGAATTATCACGTGATATCAACCAAGCCAATCAAATGAAGGAATCGC
CAACTGATACTGTCAGTCTTATCAACGAAATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002664-exon-sc0000021-1575043694:251314..251875 | TCONS_00002664-exon-sc0000021-1575043694:251314..251875 | Clytia hemisphaerica | exon |
| TCONS_00002664-exon-sc0000021-1575043694:250444..250730 | TCONS_00002664-exon-sc0000021-1575043694:250444..250730 | Clytia hemisphaerica | exon |
| TCONS_00002664-exon-sc0000021-1575043694:249051..249179 | TCONS_00002664-exon-sc0000021-1575043694:249051..249179 | Clytia hemisphaerica | exon |
| TCONS_00002664-exon-sc0000021-1575043694:247785..248618 | TCONS_00002664-exon-sc0000021-1575043694:247785..248618 | Clytia hemisphaerica | exon |
| TCONS_00002664-exon-sc0000021-1510915933:251314..251875 | TCONS_00002664-exon-sc0000021-1510915933:251314..251875 | Clytia hemisphaerica | exon |
| TCONS_00002664-exon-sc0000021-1510915933:250444..250730 | TCONS_00002664-exon-sc0000021-1510915933:250444..250730 | Clytia hemisphaerica | exon |
| TCONS_00002664-exon-sc0000021-1510915933:249051..249179 | TCONS_00002664-exon-sc0000021-1510915933:249051..249179 | Clytia hemisphaerica | exon |
| TCONS_00002664-exon-sc0000021-1510915933:247785..248618 | TCONS_00002664-exon-sc0000021-1510915933:247785..248618 | Clytia hemisphaerica | exon |
| TCONS_00002664-exon-sc0000021-1491911889:251314..251875 | TCONS_00002664-exon-sc0000021-1491911889:251314..251875 | Clytia hemisphaerica | exon |
| TCONS_00002664-exon-sc0000021-1491911889:250444..250730 | TCONS_00002664-exon-sc0000021-1491911889:250444..250730 | Clytia hemisphaerica | exon |
| TCONS_00002664-exon-sc0000021-1491911889:249051..249179 | TCONS_00002664-exon-sc0000021-1491911889:249051..249179 | Clytia hemisphaerica | exon |
| TCONS_00002664-exon-sc0000021-1491911889:247785..248618 | TCONS_00002664-exon-sc0000021-1491911889:247785..248618 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:247785..251875 - |
Blast
The following BLAST results are available for this feature:
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