TCONS_00046910-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046910-protein
Unique NameTCONS_00046910-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1262

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046910-protein ID=TCONS_00046910-protein|Name=TCONS_00046910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1262bp
MSLLKYFKPTPKKTTPKSEDSVKLAIGEIVWTKLSDFPWWPCFVCKEPGS
EKLFDENSVHVQFFGDPPTRDWVLKRNVKQFSSMKPHENEEDVKAAFKEA
CEAEKLSKEKRIEQYYADDLSESDDQETNNNDVKEDEEDDDKENTTKGGQ
KRSLSSKPKSRKRIKLCIESESDEEFDDETKDETFKPEEKASSEEEEMQS
DDSVSSTEKKPKSVSTPKVNGSIKRKISTPNNNSFKDQTPNKKLNASISR
AQSTLSKFSSPVQAPPSPSVMDSECTQYTHNRLEFLKDGKRKDKQGRLHT
DSEYDSRTLLVPDWFLNDSKEVTPGLKQWWILKSKMYDTVIFFKVGKFYE
FYHMDADVGVKELGLLYMKGKFAHCGFPEVAFERYSDILIQRGYKVARIE
QTETPQALAARGGGKVVKREVCAIITKGTRTYGIMEAKGDESSAAYLLAF
VEKPCPDGQIGESEFGVCFVDTSIGKFYLGQFVDDRQCSRFLTMISQFPP
VQVLYEKKGLSPKISSILNNELLASIKEPLNPGSEFWDSAKTLKTFHKEN
YFADRKDDQVHWPPLLKEVLEEGDKVGLEAPISFQLAISALGACTWYLKK
CCIEQELLSMCQFQKYIPPDDVTQKKKVQDNTLGQHMILDGITLTNLDII
QNADGGTEGTLLELLSFCATIFGKRYFTQWLCMPLCQKKLIDARLDAVED
LMNNNSVFNDCRSIMKQLPDLDRVLRRIHAMGSLRRSQDHPEGRAVYFNI
DVFNKKKIADLLSAIEGFQKVLNIIELARKHDFKSKLINNLVQLEDEGLG
FPDLKPMLHFFKMAFDHRKARETGTIHPKPGVDNDYDAAQCDIELINDKL
NNYLKTQRKRLGYTNIHYWGNGKNRFQLEVPEDALRKSTPEDYHLKSQKK
GYKRFYTDFIVKMIEQLTKAEERRDNALNDTLRSIFNKFDQHYLVWQKAV
HLLATLDCLMSLAIYSRNISGVSCRPEIIDIVDGEGNERKPFIELRNSRH
PCSALSWKGEDFIPNDILLGIDEEGKTDDSTFVLITGPNMGGKSTLMRQA
GTILIMAQLGCYVPADVCRFTPVDRVFTRLGARDRIMHGESTFFVELSET
SIIFQHATKHSLVLLDELGRGTATFDGTAIASSVVNELSTKYNCRTFFST
HYHSLVDDFTENPKVKLGHMACMVEKEDESITDPTEETITFLYKFTGGAC
PKSYGFNAAALAGIPKTIIKRAHEKAVQFEESTKNLKHLRSLLNAAKENK
LRTDILKELCIR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029930XLOC_029930Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046910TCONS_00046910Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007696DNA_mismatch_repair_MutS_core
IPR000432DNA_mismatch_repair_MutS_C
IPR000313PWWP_dom
IPR007861DNA_mismatch_repair_MutS_clamp
IPR016151DNA_mismatch_repair_MutS_N
IPR007860DNA_mmatch_repair_MutS_con_dom
IPR007695DNA_mismatch_repair_MutS-lik_N
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0030983mismatched DNA binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006298mismatch repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006298 mismatch repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0030983 mismatched DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 910..930
NoneNo IPR availableCOILSCoilCoilcoord: 1229..1249
NoneNo IPR availableGENE3D3.40.50.300coord: 973..1258
e-value: 2.3E-44
score: 151.0
NoneNo IPR availablePIRSFPIRSF037677Msh6coord: 14..1260
e-value: 0.0
score: 1168.1
NoneNo IPR availableGENE3D1.10.1420.10coord: 637..813
e-value: 9.1E-30
score: 103.9
coord: 820..971
e-value: 1.9E-11
score: 44.1
NoneNo IPR availableGENE3D2.30.30.140coord: 20..115
e-value: 5.1E-16
score: 58.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..273
NoneNo IPR availableSUPERFAMILY63748Tudor/PWWP/MBTcoord: 19..138
IPR007696DNA mismatch repair protein MutS, coreSMARTSM00533DNAendcoord: 656..1006
e-value: 1.4E-60
score: 217.3
IPR007696DNA mismatch repair protein MutS, corePFAMPF05192MutS_IIIcoord: 643..963
e-value: 1.5E-33
score: 116.6
IPR007696DNA mismatch repair protein MutS, coreSUPERFAMILY48334DNA repair protein MutS, domain IIIcoord: 640..968
IPR000432DNA mismatch repair protein MutS, C-terminalSMARTSM00534mutATP5coord: 1030..1227
e-value: 9.6E-106
score: 367.3
IPR000432DNA mismatch repair protein MutS, C-terminalPFAMPF00488MutS_Vcoord: 1034..1229
e-value: 1.6E-68
score: 230.4
IPR000432DNA mismatch repair protein MutS, C-terminalPROSITEPS00486DNA_MISMATCH_REPAIR_2coord: 1111..1127
IPR000313PWWP domainSMARTSM00293PWWP_4coord: 24..82
e-value: 2.2E-11
score: 53.8
IPR000313PWWP domainPFAMPF00855PWWPcoord: 25..103
e-value: 4.9E-15
score: 55.7
IPR000313PWWP domainPROSITEPS50812PWWPcoord: 26..84
score: 15.59
IPR007861DNA mismatch repair protein MutS, clampPFAMPF05190MutS_IVcoord: 831..923
e-value: 8.6E-13
score: 48.4
IPR016151DNA mismatch repair protein MutS, N-terminalGENE3D3.40.1170.10coord: 316..446
e-value: 7.8E-43
score: 145.1
IPR016151DNA mismatch repair protein MutS, N-terminalSUPERFAMILY55271DNA repair protein MutS, domain Icoord: 317..429
IPR007860DNA mismatch repair protein MutS, connector domainPFAMPF05188MutS_IIcoord: 446..604
e-value: 3.2E-11
score: 43.6
IPR007860DNA mismatch repair protein MutS, connector domainGENE3D3.30.420.110coord: 447..620
e-value: 6.5E-33
score: 113.6
IPR007860DNA mismatch repair protein MutS, connector domainSUPERFAMILY53150DNA repair protein MutS, domain IIcoord: 440..509
coord: 553..652
IPR007695DNA mismatch repair protein MutS-like, N-terminalPFAMPF01624MutS_Icoord: 323..431
e-value: 3.7E-33
score: 114.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 990..1230

Blast
[Close]
BLAST of TCONS_00046910-protein vs. Swiss-Prot (Human)
Match: MSH6 (DNA mismatch repair protein Msh6 OS=Homo sapiens GN=MSH6 PE=1 SV=2)

HSP 1 Score: 1103.97 bits (2854), Expect = 0.000e+0
Identity = 605/1298 (46.61%), Postives = 820/1298 (63.17%), Query Frame = 0 
Query:   12 KKTTPKSEDSVKLAIGEIVWTKLSDFPWWPCFVCKEPGSEKLFDENS----VHVQFFGDPPTRDWVLKRNVKQFSSMKPHENEE---------DVKAAFKEACEAEKLSKEKRIEQYYADDLSESDDQE---TNNNDVKEDEEDDDKENTTKGGQKRSLSSKPKSRKRIKLCIESESDEEFDDETKDETFKPEEKASSEEEEMQSD--DSVSSTEKKPKSVSTPKV-----NGSIKRKISTPNNNSFKDQTPN--KKLNASISRAQSTLSKFSSPVQAPPSPSVM-----DSECTQYTHNRLEFLKDGKRKDKQGRLHTDSEYDSRTLLVPDWFLNDSKEVTPGLKQWWILKSKMYDTVIFFKVGKFYEFYHMDADVGVKELGLLYMKGKFAHCGFPEVAFERYSDILIQRGYKVARIEQTETPQALAARGG--------GKVVKREVCAIITKGTRTYGIMEAKGDESSAAYLLAFVEKPCPDGQIGESEFGVCFVDTSIGKFYLGQFVDDRQCSRFLTMISQFPPVQVLYEKKGLSPKISSILNNELLASIKEPLNPGSEFWDSAKTLKTFHKENYFADRKDDQ--VHWPPLLKEVLEEGDKVGLEAPISFQLAISALGACTWYLKKCCIEQELLSMCQFQKYIPPDD---VTQKKKVQDNTLGQHMILDGITLTNLDIIQNA-DGGTEGTLLELLSFCATIFGKRYFTQWLCMPLCQKKLIDARLDAVEDLMNNNSVFNDCRSIMKQLPDLDRVLRRIHAMGSLRRSQDHPEGRAVYFNIDVFNKKKIADLLSAIEGFQKVLNIIELARK--HDFKSKLINNLVQLED---EGLGFPDLKPMLHFFKMAFDHRKARETGTIHPKPGVDNDYDAAQCDIELINDKLNNYLKTQRKRLGYTNIHYWGNGKNRFQLEVPEDALRKSTPEDYHLKSQKKGYKRFYTDFIVKMIEQLTKAEERRDNALNDTLRSIFNKFDQHYLVWQKAVHLLATLDCLMSLAIYSRNISGVSCRPEIIDIVDGEGNERKPFIELRNSRHPCSALSWKGEDFIPNDILLGIDEEGKTDDSTF-VLITGPNMGGKSTLMRQAGTILIMAQLGCYVPADVCRFTPVDRVFTRLGARDRIMHGESTFFVELSETSIIFQHATKHSLVLLDELGRGTATFDGTAIASSVVNELSTKYNCRTFFSTHYHSLVDDFTENPKVKLGHMACMVEKEDESITDPTEETITFLYKFTGGACPKSYGFNAAALAGIPKTIIKRAHEKAVQFEESTKNLKHLRSLLNAAKENKLRTDILKEL 1259
            +   P +  S   + G++VW K+  +PWWPC V   P       E      VHVQFF D PTR WV KR +K ++  K  E ++         ++  A + A EA    K KR+E    D+ SE +++E        V +  E+D++  + +  Q ++  S+  SR+  K  + S  D E D    D  FKP+ K     +E+ S   DS S     P  V+  +      NGS+KRK S       + +TP+  K+  +  S  ++TL  FS+P  +     V       S  T + H  LE+LK+ KR+D+  R     ++D+ TL VP+ FLN     TPG+++WW +KS+ +D VI +KVGKFYE YHMDA +GV ELGL++MKG +AH GFPE+AF RYSD L+Q+GYKVAR+EQTETP+ + AR           +VV+RE+C IITKGT+TY ++E    E+ + YLL+  EK   D       +GVCFVDTS+GKF++GQF DDR CSRF T+++ +PPVQVL+EK  LS +  +IL + L  S++E L PGS+FWD++KTL+T  +E YF ++  D   V  P +LK +  E D +GL      +LA+SALG C +YLKKC I+QELLSM  F++YIP D     T +         Q M+LD +TL NL+I  N  +G TEGTLLE +  C T FGKR   QWLC PLC    I+ RLDA+EDLM      ++   ++K+LPDL+R+L +IH +GS  +SQ+HP+ RA+ +    ++KKKI D LSA+EGF+ +  II +  +    FKSK++  ++ L+    EG  FPDL   L+ +  AFDH KAR+TG I PK G D+DYD A  DI      L  YL+ QR R+G   I YWG G+NR+QLE+PE+   ++ PE+Y LKS KKG KR++T  I K +  L  AEERRD +L D +R +F  FD++Y  WQ AV  +A LD L+ LA YSR   G  CRP I+   D       PF+EL+ SRHPC   ++ G+DFIPNDIL+G +EE + +   + VL+TGPNMGGKSTLMRQAG + +MAQ+GCYVPA+VCR TP+DRVFTRLGA DRIM GESTFFVELSET+ I  HAT HSLVL+DELGRGTATFDGTAIA++VV EL+    CRT FSTHYHSLV+D+++N  V+LGHMACMVE E E   DP++ETITFLYKF  GACPKSYGFNAA LA +P+ +I++ H KA +FE+  ++L+  R +  A++ + +  + + +L
Sbjct:   78 RSVAPAAPTSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTRGWVSKRLLKPYTGSKSKEAQKGGHFYSAKPEILRAMQRADEALNKDKIKRLELAVCDEPSEPEEEEEMEVGTTYVTDKSEEDNEIESEEEVQPKTQGSRRSSRQIKKRRVIS--DSESDIGGSDVEFKPDTKEEGSSDEISSGVGDSESEGLNSPVKVARKRKRMVTGNGSLKRKSS-------RKETPSATKQATSISSETKNTLRAFSAPQNSESQAHVSGGGDDSSRPTVWYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNS---CTPGMRKWWQIKSQNFDLVICYKVGKFYELYHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE-EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETKTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQTKNPEGR-FPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPED-----TPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECE---DPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLFREVCLASERSTVDAEAVHKL 1353
The following BLAST results are available for this feature:
BLAST of TCONS_00046910-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSH60.000e+046.61DNA mismatch repair protein Msh6 OS=Homo sapiens G... [more]
back to top