TCONS_00047297-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00047297-protein
Unique Name	TCONS_00047297-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	435

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00047297-protein ID=TCONS_00047297-protein|Name=TCONS_00047297-protein|organism=Clytia hemisphaerica|type=polypeptide|length=435bp
MASKRCVQNIIKLQRKLKLFNTIPRSTANFSCRNLNTTAAVVESSSEWKR
KSNGHSSSSSLFRVAGITTALGLYMYHQNSTVEAKEDLQKDEQVMSRREQ
RFNQFASFEYYGQIVMSPQDFIESITENKPKLARRGKIRLTERDFNRIEG
STPRISSGSNTFFRDRHHDGVITYSEYIFLVTVLTKSNTGLQTALKMMDI
NGDRVISFEEFQQIVQMINKSASKSTRSRVEDEQDTVELTTTLMLHLFGK
AGNDMVSFDRFFKFMDDLQSEVLELEFHEYSKSMRTISEIDFAKILLRNT
MISESQYTEYLDRLKTRLEQIDHPKGITLEQFKAFHIFLSNLEDFVIAVQ
MTNAMNQTVDKELFTRAIKVTTGKDIDPHIVEVVFSLFDQDGDGKLSQNE
FIGIMKDRLKRGFGKFPNTSGLAGFKHCLKKEMVK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030127	XLOC_030127	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00047297	TCONS_00047297	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR018247	EF_Hand_1_Ca_BS
IPR011992	EF-hand-dom_pair

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 190..218 e-value: 6.0E-4 score: 29.1 coord: 380..408 e-value: 3.7E-4 score: 29.8
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 165..216 e-value: 2.4E-7 score: 31.0
IPR002048	EF-hand domain	PFAM	PF13833	EF-hand_8	coord: 357..408 e-value: 8.4E-9 score: 35.0
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 376..411 score: 12.644
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 186..221 score: 12.254
None	No IPR available	GENE3D	1.10.238.10		coord: 299..411 e-value: 7.5E-11 score: 41.4
None	No IPR available	GENE3D	1.10.238.10		coord: 94..282 e-value: 1.8E-21 score: 76.0
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 389..401
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 199..211
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 165..267
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 296..406

Blast

[Close]

BLAST of TCONS_00047297-protein vs. Swiss-Prot (Human)
Match: MICU3 (Calcium uptake protein 3, mitochondrial OS=Homo sapiens GN=MICU3 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.401e-78
Identity = 146/403 (36.23%), Postives = 223/403 (55.33%), Query Frame = 0

Query:   84 AKEDLQKDEQVMSRREQRFNQFASFEYYGQIVMSPQDFIESITENKPKLARRGKIRLTERDFNRIEGSTPRISSGSNTFFRDRHHDGVITYSEYIFLVTVLTKSNTGLQTALKMMDINGDRVISFEEF---QQIV---------------------------------------QMINKSASKSTRSR---------VEDEQDTVELTT--TLMLHLFGKAGNDMVSFDRFFKFMDDLQSEVLELEFHEYSKSMRTISEIDFAKILLRNTMISESQYTEYLDRLKTRLEQIDHPKGITLEQFKAFHIFLSNLEDFVIAVQMTNAMNQTVDKELFTRAIKVTTGKDIDPHIVEVVFSLFDQDGDGKLSQNEFIGIMKDRLKRGFGKFPNTSGLAGFKHCLKKEM 433
             + D++  +   + RE+RF  FAS E  GQ+ M+P DFI ++T ++PK+A+  K  L++++ N++   TP +  GS+  FR+    GVI+Y+EY+FL+ +LTK + G + A  M D +G+ ++  +EF   Q+I                                        +++++S   + R            E   D   L T  TL++H FGK G   ++F+ F++FMD+LQ+EVLE+EF  YS  M TISE DFA ILLR T +  +  + +L+ ++     I   KGIT ++F++F  FL+NLEDF IA+ M N  ++++ ++ F RA+ V TG    PH+V  VF +FD D D +LS  EFIGIMKDRL RGF  +        FK CLKKE+
Sbjct:  131 GRTDIEDLDLYATSRERRFRLFASIECEGQLFMTPYDFILAVTTDEPKVAKTWK-SLSKQELNQMLAETPPVWKGSSKLFRNLKEKGVISYTEYLFLLCILTKPHAGFRIAFNMFDTDGNEMVDKKEFLVLQEIFRKKNEKREIKGDEEKRAMLRLQLYGYHSPTNSVLKTDAEELVSRSYWDTLRRNTSQALFSDLAERADDITSLVTDTTLLVHFFGKKGKAELNFEDFYRFMDNLQTEVLEIEFLSYSNGMNTISEEDFAHILLRYTNVENT--SVFLENVRY---SIPEEKGITFDEFRSFFQFLNNLEDFAIALNMYNFASRSIGQDEFKRAVYVATGLKFSPHLVNTVFKIFDVDKDDQLSYKEFIGIMKDRLHRGFRGYKTVQKYPTFKSCLKKEL 527

The following BLAST results are available for this feature:

BLAST of TCONS_00047297-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00047297-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MICU3	2.401e-78	36.23	Calcium uptake protein 3, mitochondrial OS=Homo sa...	[more]

You are here

TCONS_00047297-protein (polypeptide) - C. hemisphaerica