TCONS_00047310-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047310-protein
Unique NameTCONS_00047310-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length207

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047310-protein ID=TCONS_00047310-protein|Name=TCONS_00047310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
NTKMTKMTDFSISSILNLSSSFSKKTETYFQDGYNVTHLKRQTSSTSSVD
DFKNISSTDESGSNTSPPRKKKSRTVFTRQQIQHLENAFDRKKYFTNSER
QKLATDLMLSETQVKIWLQNRRNKWKKQLQTDLNYNHGKSSSTNPLQSSV
SPYNFTPKILYSPPTQARIGLKHDTNERCLQPLLTDLNSTSLRASEQRLF
DYDSKRA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030138XLOC_030138Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047310TCONS_00047310Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020479Homeobox_metazoa
IPR001356Homeobox_dom
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020479Homeobox domain, metazoaPRINTSPR00024HOMEOBOXcoord: 117..126
score: 69.3
coord: 107..117
score: 64.67
coord: 92..103
score: 30.37
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 70..132
e-value: 1.9E-20
score: 83.9
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 71..127
e-value: 2.9E-18
score: 65.3
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 68..128
score: 19.985
NoneNo IPR availableGENE3D1.10.10.60coord: 54..129
e-value: 6.9E-23
score: 80.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..76
NoneNo IPR availableCDDcd00086homeodomaincoord: 71..128
e-value: 1.46665E-17
score: 72.6612
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 52..128

Blast
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BLAST of TCONS_00047310-protein vs. Swiss-Prot (Human)
Match: HMX3 (Homeobox protein HMX3 OS=Homo sapiens GN=HMX3 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.008e-23
Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 0 
Query:   46 TSSVDDFKNISSTDESGSNTSPPRKKKSRTVFTRQQIQHLENAFDRKKYFTNSERQKLATDLMLSETQVKIWLQNRRNKWKKQLQTDL---NYNHGKS 140
            T   +D+K  + + E        RKKK+RTVF+R Q+  LE+ FD K+Y ++SER  LA  L L+ETQVKIW QNRRNKWK+QL  +L   N +H  +
Sbjct:  206 TPGAEDWKKGAESPEKKPAC---RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAA 300
The following BLAST results are available for this feature:
BLAST of TCONS_00047310-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMX35.008e-2347.96Homeobox protein HMX3 OS=Homo sapiens GN=HMX3 PE=1... [more]
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