TCONS_00049072-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049072-protein
Unique NameTCONS_00049072-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length162

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049072-protein ID=TCONS_00049072-protein|Name=TCONS_00049072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MTSFANNDGGFSAQNAWDDLPPESLRTGFGNTQNNKRRKLDFNVSANQSY
GNNTFLNKTVPPETPANLQLQVGNDDDGSHNLKSIHEIPEKYRPIFPFAY
FNALQSKVFDEVMYSDNPMVICAPTGSGKTAIFEMSIIRLLLSTTNFTYK
IVYLAPIKALCS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031182XLOC_031182Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049072TCONS_00049072Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 103..161
e-value: 4.9E-9
score: 36.1
NoneNo IPR availableGENE3D3.40.50.300coord: 75..162
e-value: 2.8E-11
score: 42.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availableCDDcd00046DEXDccoord: 119..160
e-value: 6.64624E-8
score: 46.5616
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 91..161

Blast
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BLAST of TCONS_00049072-protein vs. Swiss-Prot (Human)
Match: HFM1 (Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.012e-26
Identity = 64/147 (43.54%), Postives = 83/147 (56.46%), Query Frame = 0 
Query:   30 GNTQNNKRRKLDFNVSANQSYGNNTFLNKTV------PPE-----TPANLQLQVGNDDDGSHNLKSIHEIPEKYRPIFP-FAYFNALQSKVFDEVMYSDNPMVICAPTGSGKTAIFEMSIIRLLLST--TNFTYKIVYLAPIKALCS 162
            G ++N    K  F  SAN    NN F    +       P       P ++Q    N   G  +LK++ EIP K+R IF  F YFN +QSK FD+++Y+D   VICAPTGSGKT +FE++I RLL+         KIVY+APIKALCS
Sbjct:  201 GKSRNYSNSKQKFQYSANVFTANNAFSASEIGEGMFKAPSFSVAFQPHDIQEVTEN---GLGSLKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCS 344
The following BLAST results are available for this feature:
BLAST of TCONS_00049072-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HFM11.012e-2643.54Probable ATP-dependent DNA helicase HFM1 OS=Homo s... [more]
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