TCONS_00052075-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00052075-protein
Unique Name	TCONS_00052075-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	873

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00052075-protein ID=TCONS_00052075-protein|Name=TCONS_00052075-protein|organism=Clytia hemisphaerica|type=polypeptide|length=873bp
MRKCLAIILSGLIVLQNLLTVSSQSCNGESIQDLNATYIIGGLFPVHYRV
SETNQYIFNILSIVWVEAFLFALREINNIKDLLPGIKLGYDIKDTCNDGM
VAENHVLDLMTDRKFFQSSHQAFSNWYAPCECYDEQQSKMIGVVGGASST
ISSIAAHTLIAGNIPQISYASTSPLLSNSRTYPNFLRTIPSDLQQVSVVT
ELLQVMDWTYVSLLATDDDFGRLALNLVQENFKQNNICIALEYLYSSNLS
TGDLAEITRGLSKYQNRTKVVIIWATEFWNVEKIITNTSNDGLDDMLWIV
LSESWITKFQSNLPRRQHVIMLQLEDFQVESFVDHMNKLSFGSDLGNIWM
PQYWTSLGICPENEGERTKYCYDHWIPEGRVLGRKYSENVIASVYAFAYG
LHKTLDCNEKNCEQKPFLDYEALKLNILANTFILPSTNLSIEFQPNGDVN
ANSYQIRMFSFEKNVLLGSWSKTNNIQINQTEFWLHYDNENQSSTNIPAT
CSTPCKPGFYKRQESQTCCWSCIQCPYDEVSLGIDSLGCQKCGPLEIANK
QQDKCVPLPNKEFSLTAQTGLIIGIISLVGFMFTLFTILVYMILWETPGV
KSTNRELSLIQLVCILLLFCFPVLNLYTHKSLCIARQVIFGSLHSLILVL
VLLKTYRLFKLFQPQFFKKHTRMFLTISAQIFFAFFLLLIETTVLAMWYT
VHQPSMILYSSKGEGGYIYHCGDHESYVLYAIIIYVILLSLASGFIAFRA
RSLPANFNEAQYIWLAMFTYCIIWCAFFPLHLSSNKLYKSTILLSMNLAS
TFSLIAILFGNKIRMLVCLPHLNNRLHFTGLAANAYIRTFSLRQSESPGK
NKKKKMRDKKRVISFSFELENNV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_032982	XLOC_032982	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00052075	TCONS_00052075	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000337	GPCR_3
IPR011500	GPCR_3_9-Cys_dom
IPR017978	GPCR_3_C
IPR001828	ANF_lig-bd_rcpt
IPR028082	Peripla_BP_I

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000337	GPCR, family 3	PRINTS	PR00248	GPCRMGR	coord: 758..779 score: 51.14 coord: 680..703 score: 17.97 coord: 143..169 score: 41.44 coord: 641..662 score: 28.55 coord: 77..96 score: 55.62 coord: 195..211 score: 27.21 coord: 597..619 score: 46.2 coord: 735..758 score: 42.84 coord: 176..195 score: 49.06 coord: 211..228 score: 28.3 coord: 35..47 score: 50.72 coord: 62..77 score: 43.95
None	No IPR available	GENE3D	3.40.50.2300		coord: 36..450 e-value: 1.8E-55 score: 187.9
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..26 score: 6.0
IPR011500	GPCR, family 3, nine cysteines domain	PFAM	PF07562	NCD3G	coord: 500..543 e-value: 1.5E-10 score: 40.8
IPR017978	GPCR family 3, C-terminal	PFAM	PF00003	7tm_3	coord: 582..814 e-value: 5.4E-36 score: 124.5
IPR017978	GPCR family 3, C-terminal	PROSITE	PS50259	G_PROTEIN_RECEP_F3_4	coord: 569..823 score: 35.234
IPR001828	Receptor, ligand binding region	PFAM	PF01094	ANF_receptor	coord: 65..456 e-value: 6.5E-51 score: 173.4
IPR028082	Periplasmic binding protein-like I	SUPERFAMILY	53822	Periplasmic binding protein-like I	coord: 35..478

Blast

[Close]

BLAST of TCONS_00052075-protein vs. Swiss-Prot (Human)
Match: GRM3 (Metabotropic glutamate receptor 3 OS=Homo sapiens GN=GRM3 PE=1 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 1.970e-80
Identity = 234/849 (27.56%), Postives = 393/849 (46.29%), Query Frame = 0

Query:   39 IIGGLFPVHYRVSETNQ--YIFNILSIVWVEAFLFALREINNIKDLLPGIKLGYDIKDTCNDGMVAENHVLDLMTDRKFFQSSHQAFSNWYAPCECYDEQQS---KMIGVVGGASSTISSIAAHTLIAGNIPQISYASTSPLLSNSRTYPNFLRTIPSDLQQVSVVTELLQVMDWTYVSLLATDDDFGRLALNLVQENFKQNNICIA-LEYLYSSNLSTGDLAEITRGLSKYQNRTKVVIIWATEFWNVEKIITNTSNDGLDDMLWIVLSESWITKFQSNLPRRQHV----IMLQLEDFQVESFVDHMNKLSFGSDLGNIWMPQYWTSLGICP-ENEGERTKYCYDHWIPEGRVLGRKYSEN-----VIASVYAFAYGLHK---TLDCN-EKNCEQKPFLDYEALKLNILANTFILPSTNLSIEFQPNGDVNA---------NSYQIRMFSFE------KNVLLGSWSKTNNIQINQTEFWLHYDNENQSSTNIPAT-CSTPCKPGFYKR-QESQTCCWSCIQC-PYDEVSLGIDSLGCQKCGPLEIANKQQDKCVPLPNKEFSLTAQTGLIIGIISLVGFMFTLFTILVYMILWETPGVKSTNRELSLIQLVCILLLFCFPVLNLYTHKS-LCIARQVIFGSLHSLILVLVLLKTYRLFKLFQPQFFKKHTRMFLTISAQIFFAFFLLLIETTVLAMWYTVHQPSMILYS-SKGEGGYIYHCGDHESYVLYAIIIYVILLSLASGFIAFRARSLPANFNEAQYIWLAMFTYCIIWCAFFPLHLSSNKLYK---STILLSMNLASTFSLIAILFGNKIRMLVCLPHLN---NRLHFTGLAANAYIRTFS 841
            ++GGLFP++ + + T +   I     I  +EA LFA+ EIN    LLPG+KLG  I DTC+    A    L+ +  R       +A   +  P   Y  Q++    + GV+GG+ S++S   A+ L    IPQISYASTS  LS+   Y  F RT+P D  Q   + E+L+  +WTYVS +A++ D+G   +   ++  +  NICIA  E +  SN+     + I   L K   R  V+ + + +     + +   ++       W+  S+ W  + +S +   +HV    I L+L    V  F  +   L+  ++  N W   +W     C  +N+    + C  H      +    Y +      V+ +VYA A+ LHK   TL  N  K C+    LD + L  + L         N +  F PN D ++            +  +F+F+        + +G W++T ++ +N     +H+     S  ++P + CS PC P   K  Q    CCW CI C PY+ ++   D   C  CG  +        C  LP           +    I+ +GFM T   + V++    TP VK++ REL  I L  + L +C     +      +C  R++  GS  ++    +L KT  + ++F           F++ S+Q+F    L+L++  ++++W  +  P    Y+ ++     I  C   +S +L ++   VIL+ L + + AF+ R  P NFNEA++I   M+T CIIW AF P+   ++  Y+   +T+ +S++L S F ++  LF  K+ +++  P  N   +RLH    + +    T+S
Sbjct:   40 VLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFV--RASLTKVDEA--EYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDD----SRELIAAASRANASFTWVA-SDGWGAQ-ESIIKGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLA----IDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNTTKLCDAMKILDGKKLYKDYLLK------INFTAPFNPNKDADSIVKFDTFGDGMGRYNVFNFQNVGGKYSYLKVGHWAETLSLDVNS----IHW-----SRNSVPTSQCSDPCAPNEMKNMQPGDVCCWICIPCEPYEYLA---DEFTCMDCGSGQWPTADLTGCYDLPEDYIRWEDAWAIGPVTIACLGFMCTCMVVTVFIKHNNTPLVKASGRELCYILLFGVGLSYCMTFFFIAKPSPVICALRRLGLGSSFAICYSALLTKTNCIARIFDGVKNGAQRPKFISPSSQVFICLGLILVQIVMVSVWLILEAPGTRRYTLAEKRETVILKCNVKDSSMLISLTYDVILVILCTVY-AFKTRKCPENFNEAKFIGFTMYTTCIIWLAFLPIFYVTSSDYRVQTTTMCISVSL-SGFVVLGCLFAPKVHIILFQPQKNVVTHRLHLNRFSVSGTGTTYS 854

The following BLAST results are available for this feature:

BLAST of TCONS_00052075-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00052075-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GRM3	1.970e-80	27.56	Metabotropic glutamate receptor 3 OS=Homo sapiens ...	[more]

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TCONS_00052075-protein (polypeptide) - C. hemisphaerica