TCONS_00052643-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052643-protein
Unique NameTCONS_00052643-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length234

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052643-protein ID=TCONS_00052643-protein|Name=TCONS_00052643-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MEDMIECLNTLKTAFSKKILNNDQFHSAFANALTAWCLILSVADDSIACE
QIQNCMGVLCKLLELGSLNLRIAAGEAAALVYELAYNNRMSLQGPVNTLH
NLLQEFANESGRHKGKREKKQQKSSFRDILKSVKSNIPPEQTIKFGPEFI
EIGSWSWLLRYRAFKDALGPGTNIHLQTNPFVRETFDLGLPLPKELKESK
VSKYEKQLVNSASSKVRTQKRNQRRDHKHKASGL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033266XLOC_033266Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052643TCONS_00052643Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007701Interferon-rel_develop_reg_N
IPR006921Interferon-rel_develop_reg_C
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007701Interferon-related developmental regulator, N-terminalPFAMPF05004IFRDcoord: 2..133
e-value: 6.2E-24
score: 84.6
IPR006921Interferon-related developmental regulator, C-terminalPFAMPF04836IFRD_Ccoord: 179..227
e-value: 3.0E-15
score: 56.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 207..234

Blast
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BLAST of TCONS_00052643-protein vs. Swiss-Prot (Human)
Match: IFRD1 (Interferon-related developmental regulator 1 OS=Homo sapiens GN=IFRD1 PE=1 SV=4)

HSP 1 Score: 137.117 bits (344), Expect = 6.326e-38
Identity = 74/202 (36.63%), Postives = 120/202 (59.41%), Query Frame = 0 
Query:   31 NALTAWCLILSVADDSIACEQIQNCMGVLCKLLELGSLNLRIAAGEAAALVYELAYNNRMSL-QGPVNTLHNLLQEFANESGRHKGKREKKQQKSSFRDILKSVKSNIPPEQTIKFGPEFIEIGSWSWLLRYRAFKDALGPGTNIHLQTNPFVRETFDLGLPL---PKELKESKVSKYEKQLVNSASSKVRTQKRNQRRDHK 228
            ++L AW L+L++   +   ++++     L  LL    +N+RIAAGE+ AL++ELA           + +L  +L+  A +  +H+ K +K++Q+S FRD+L++V+    P +TIKFGPE + I  W     Y  FK+ LG G   HLQ+N F+R  F+LG P+      LK  K+S++E+ L NSA+ K RT+ R++ RD +
Sbjct:  243 SSLLAWTLLLTICPINEVKKKLEMHFHKLPSLLSCDDVNMRIAAGESLALLFELARGIESDFFYEDMESLTQMLRALATDGNKHRAKVDKRKQRSVFRDVLRAVEERDFPTETIKFGPERMYIDCWVKKHTYDTFKEVLGSGMQYHLQSNEFLRNVFELGPPVMLDAATLKTMKISRFERHLYNSAAFKARTKARSKCRDKR 444
The following BLAST results are available for this feature:
BLAST of TCONS_00052643-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IFRD16.326e-3836.63Interferon-related developmental regulator 1 OS=Ho... [more]
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