TCONS_00052730-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052730-protein
Unique NameTCONS_00052730-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1036

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052730-protein ID=TCONS_00052730-protein|Name=TCONS_00052730-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1036bp
MSRSPFYTGGTTFGGANSYRETSGKRMKLSPVSNRVRTTRTLMKAKPLPN
TKKNIVTSQTAKRILNTLGKMSSPVKDSKRIPRSVFTKPALSELVKNQAK
VVSRQSESVAPPVSSLNKPLKIVSKPENFQNKMDSIRRFNQKSEVKTQPA
QVPSFSFKQQTVPPLVAPPKQEIKIQQPPKLPTAEPSKSSMKIKRDKMTS
HFTMAKEPEVVNSMPEITSTAAPLPITVMPTFNFAKSALEKQKASNIFSP
SLNVTPILKPTQEKQQEIKTKIEPPIPFEIPKSVEVTKSTDGFTFATPEV
KGTKSFSTPLLKDFVFSTPVNLANKAKATSDIPKPTAKIEKLVVSTQXTK
SFSTPLLKDFVFSTPVNLANKAKATSDIPKPTAKIEKLVVSTQPPIKPSP
APVIEQIVKPSTTIKPFKELKQNNDNATWSCPTCMIDNETTDLKCVACET
AKPGLASVASTVKSSAKPTFEIKPLKNLSKPIEDWNCPTCMIDNSNDDLK
CVACETAKPGSKSVSSETSFSGFGKLSETGVKLPTDTGFKFNSVSTTGFK
FGNDNSSGFKFNSDSTTTGFKFQSTENTGFKFGNDNSSGFKFNSDSTTTG
FKFQSTENTGFKFPTKSVDEPFKGDASAEKKTTEVSEPSKTNNLFGNSAP
SFSFGKPTETEKAPSFAFGKPSETEKAPSFSFGKPTATEKAPSFSFGKST
DNEKALSILSSSTSNEPAEVETPKPAFGSIAAAAAGGFLKVTGSSSVPFE
PTITKTDPPKSTGFAFGQASSQSVFGSTSSSQSVLGSTSKSESQPPAPSF
NFGQTKSSTTSFGSTSSVFGQASTGSVFGTPVQSDSQSAAPSFNFGQSVT
PAFNFGATQEKKEPQKTSLPSFGSSQPTESLFGAKKPEASAQPPFNFAAP
SKPESAPVFGSAPTQPAASFNFGASSTVPSFETKPSGFILSANNSANPTV
SQPPAPSGGFNFSAPNASFSFGATTTNGASDALKTGSVFGQQNTFGASNT
GNLFAIGQGSNNSNNTSSGPMKNRQIRKAVRRKKPV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033333XLOC_033333Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052730TCONS_00052730Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR013913Nup153_N
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 427..451
e-value: 3.4E-4
score: 30.0
coord: 483..507
e-value: 5.5E-4
score: 29.2
IPR001876Zinc finger, RanBP2-typePFAMPF00641zf-RanBPcoord: 429..454
e-value: 1.9E-7
score: 30.1
coord: 482..510
e-value: 6.3E-8
score: 31.7
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 485..504
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 429..448
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 481..510
score: 9.766
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 424..454
score: 9.902
IPR001876Zinc finger, RanBP2-typeSUPERFAMILY90209Ran binding protein zinc finger-likecoord: 483..509
IPR001876Zinc finger, RanBP2-typeSUPERFAMILY90209Ran binding protein zinc finger-likecoord: 427..453
NoneNo IPR availableGENE3D4.10.1060.10coord: 419..469
e-value: 2.1E-7
score: 29.7
coord: 475..527
e-value: 2.6E-9
score: 35.8
IPR013913Nucleoporin Nup153, N-terminalPFAMPF08604Nup153coord: 4..335
e-value: 1.1E-17
score: 64.0

Blast
BLAST of TCONS_00052730-protein vs. Swiss-Prot (Human)
Match: NU153 (Nuclear pore complex protein Nup153 OS=Homo sapiens GN=NUP153 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 6.547e-26
Identity = 157/565 (27.79%), Postives = 238/565 (42.12%), Query Frame = 0
Query:    1 MSRSPFYTGGTTFGGANSYRETSGKRMKLSPVSNRVRTTRTLMKAKPLPNTKKNIVTSQTAKRILNTLGKMSSPVKDSKRIPRSVFTKPALSELVKNQAKVVSRQS-----ESVAPPVSSLN--KPLKIVS-KPENFQNKM---DSIRRFNQKSEVKTQPAQVPSFSFKQQTVPPLVAPPKQEIKIQQPP-KLPTAEPSKSS-------MKIKRDKMTSHFTMAKEPEVVNSMPEITSTAAPLPITV--MPTFNFAKSAL---------EKQKASN---IFSPSLNVTPILKPTQEKQQEIKTKIEPPIPFEIPKSVEVTKSTDGFTFATP-----EVKGTKSFSTPLLKDFVFS-TPVNLANKAKAT-SDIPKPTAKIEKLVVSTQXTKSFSTPLLKDFVFSTPVNLANKAKATSDIPKPTAKIEKLVVSTQPPIKPSPAPVIEQIVKPSTTIKPFKELKQNNDNATWSCPTCMIDNETTDLKCVACETAKPGLASVA-----STVKSSAKPTF---------EIKPLKNLSKPIEDWNCPTCMIDNSNDDLKCVACETAKPGS 511
            +  SPFY G TT+GGA +    S  +++ +P    VR     MKAK L + +   VTS TA+RIL +L KMSSP+ D+KRIP S+ + P  S L ++   +   Q+     +S  PPV  L   KP+ I + +   F+  +      R+ NQ+ + K            ++ + P     ++E     P   LP A    S        M+ +R +  +   + +E   V  +P+I+     LPIT   +PTFNF+   +           Q  +N   + SPS   +P+ K +    +  +  + PP             S+ GFTF+ P     E+ G+ S   P++       T VN  N  K    D   P    E L   +         +LK   F++P       K  S   +PTA        T P +   PA                + LK     ++W C TC++ N+ TD KC+AC+ AK      A      T   S K T          + KP+      I  W+C TC++ N  + +KCVACET KPG+
Sbjct:  254 LGDSPFYPGKTTYGGAAAAVRQS--KLRNTPYQAPVRRQ---MKAKQL-SAQSYGVTSSTARRILQSLEKMSSPLADAKRIP-SIVSSPLNSPLDRSGIDITDFQAKREKVDSQYPPVQRLMTPKPVSIATNRSVYFKPSLTPSGEFRKTNQRIDNKCSTGY-------EKNMTPGQNREQRESGFSYPNFSLPAANGLSSGVGGGGGKMRRERTRFVASKPLEEEEMEVPVLPKIS-----LPITSSSLPTFNFSSPEITTSSPSPINSSQALTNKVQMTSPSSTGSPMFKFSSPIVKSTEANVLPP-------------SSIGFTFSVPVAKTAELSGSSSTLEPIISSSAHHVTTVNSTNCKKTPPEDCEGPFRPAEILKEGSVLD------ILKSPGFASP-------KIDSVAAQPTA--------TSPVVYTRPAISSFSSSGIGFG----ESLKAG---SSWQCDTCLLQNKVTDNKCIACQAAKLSPRDTAKQTGIETPNKSGKTTLSASGTGFGDKFKPV------IGTWDCDTCLVQNKPEAIKCVACETPKPGT 752          

HSP 2 Score: 110.923 bits (276), Expect = 1.566e-24
Identity = 202/685 (29.49%), Postives = 285/685 (41.61%), Query Frame = 0
Query:  427 ATWSCPTCMIDNETTDLKCVACETAKPGLASVASTVKSS--AKPTFEIKPLKNLSKPIEDWNCPTCMIDNSNDDLKCVACETAKPGSKS----------------------------------VSSETSF-----SGF--GKLSETGVKLPTDTGFKFNSVSTTGFKFG-NDNSSGFKFNSDSTTTGFKFQSTEN-------TGFKFGNDN--------------SSGFKFNSD---------STTTGFKFQSTENTGFKFPTKSVD-EPFKGDASAEKKTTEVSEPSKTNNLFGNSAPS-------FSFGKPTETEKAP----SFAFGKPSETEK---APSFSFGKPTATEKAPS----FSFGKSTDNEK----------ALSILSSSTSNEPAEVETPKPAFGSIAAAAAGGFLKVTGSSSVPFEPTITKTDPPKSTGFAFGQAS---SQSVFGST---SSSQSVLGS------TSKSESQPPAPSFNFGQTKSSTTSFGSTSSVFG--------QASTGSVFGTPVQSDSQSAAPSFNFGQSVTPAFNFGATQEKKEPQKTSLPSFGSSQPTESLFGAKKPEASAQPPFNFAAPSKPESAPVFGSAPTQPA----------ASFNFGASSTVPSF-ETKPSGFILSANNSANPTVSQPPAPSGGFNFSAPNASFSFGATTTN 977
             +W C  C + N   D KCV+C + KPG +  AS+  +   + P+     L+   KP   W+C  C++ N  D  KC+ACE+AKPG+KS                                  ++S  +F      GF  G  S++G   P   GFKF S     FKFG +  S   +   DS    FKF  +         T F+FG  N              S+GF F +          +T    + +S+ N G    TKS    PF    S  KK  E    +K    FGN  P+       F  G+  E ++ P    S  FGK ++ E+    P FSFG    T+   S    FSF  +  +EK          A    +S+T+++ A     KP F  +  +++      T +    F  + + ++PP +T F FGQ+S   S S FG+T   S+SQS+L S      T+ S      P F FG   SS     +T+S FG         A +  VFGT   + S S A    FG + TP   FG +Q   +P     P FGS   + +LF    P  S   P  F   S     PVFG  P+Q A          ++F FG+S+T  +F    PSG      NS+ P  S  P+ SGGF F+   A+F+ G+   N
Sbjct:  795 GSWECSVCCVSNNAEDNKCVSCMSEKPGSSVPASSSSTVPVSLPSGGSLGLEKFKKPEGSWDCELCLVQNKADSTKCLACESAKPGTKSGFKGFDTSSSSSNSAASSSFKFGVSSSSSGPSQTLTSTGNFKFGDQGGFKIGVSSDSGSINPMSEGFKF-SKPIGDFKFGVSSESKPEEVKKDSKNDNFKFGLSSGLSNPVSLTPFQFGVSNLGQEEKKEELPKSSSAGFSFGTGVINSTPAPANTIVTSENKSSFNLG-TIETKSASVAPFTCKTSEAKK--EEMPATKGGFSFGNVEPASLPSASVFVLGRTEEKQQEPVTSTSLVFGKKADNEEPKCQPVFSFGNSEQTKDENSSKSTFSFSMTKPSEKESEQPAKATFAFGAQTSTTADQGAA----KPVFSFLNNSSSSSSTPATSAGGGIFGSSTSSSNPPVAT-FVFGQSSNPVSSSAFGNTAESSTSQSLLFSQDSKLATTSSTGTAVTP-FVFGPGASSNN---TTTSGFGFGATTTSSSAGSSFVFGTGPSAPSASPA----FGANQTP--TFGQSQGASQPNP---PGFGSISSSTALF----PTGSQPAPPTFGTVSSSSQPPVFGQQPSQSAFGSGTTPNSSSAFQFGSSTTNFNFTNNSPSGVFTFGANSSTPAASAQPSGSGGFPFNQSPAAFTVGSNGKN 1453          
The following BLAST results are available for this feature:
BLAST of TCONS_00052730-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NU1536.547e-2627.79Nuclear pore complex protein Nup153 OS=Homo sapien... [more]
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