TCONS_00055543-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055543-protein
Unique NameTCONS_00055543-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length249

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055543-protein ID=TCONS_00055543-protein|Name=TCONS_00055543-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MLPREVLKWLQSLDLSLPIRNTRRDFSNGYLIAEIFSWYYPKEIQMHSFD
NGTSIETKTGNWSIITRFFQRQEFVIPREEIEGTIHCKPAAAQLLVQRIY
AILTNRKVSTLPNEVACDFSDRQYQESLPYHARSTATQAIKNNIANSEFV
TDPDRILCGQKAQDIIQVHFRNRQQERKEDPDRFGIKPTLCEKSPRKPAD
GCVQEVSDEMSRMKIRTAERFVQQEMRNEEPPLEISVKQHTYQNLAHAY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034932XLOC_034932Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055543TCONS_00055543Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010441CH_2
IPR001715CH-domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010441CH-like domain in sperm proteinPFAMPF06294CH_2coord: 6..100
e-value: 2.6E-34
score: 117.1
IPR001715Calponin homology domainGENE3D1.10.418.10coord: 3..111
e-value: 1.3E-9
score: 37.5
IPR001715Calponin homology domainSUPERFAMILY47576Calponin-homology domain, CH-domaincoord: 4..72

Blast
[Close]
BLAST of TCONS_00055543-protein vs. Swiss-Prot (Human)
Match: SPAT4 (Spermatogenesis-associated protein 4 OS=Homo sapiens GN=SPATA4 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.981e-57
Identity = 84/191 (43.98%), Postives = 132/191 (69.11%), Query Frame = 0 
Query:    2 LPREVLKWLQSLDLSLPIRNTRRDFSNGYLIAEIFSWYYPKEIQMHSFDNGTSIETKTGNWSIITRFFQRQEFVIPREEIEGTIHCKPAAAQLLVQRIYAILTNRKVSTLPNEVACDFSDRQYQESLPYHARSTATQAIKNNIANSEFVTDPDRILCGQKAQDIIQVHFRNRQQERKEDPDRFGIKPTLCE 192
            L R VL+WLQ LDLS   RN  RDFSNG+LIAEIF  YYP E+++ SF+NGTS++ K  NW+ + +F  R++F +P+E I GTIHCK    ++L++ +Y +LT+R++ ++ ++   +F+D  YQ  LP  +RST +++IK+NI  SE +++P+ +    KA+ +I +H   R+  RK +P+ F +KPT+ E
Sbjct:   51 LSRSVLRWLQGLDLSFFPRNINRDFSNGFLIAEIFCIYYPWELELSSFENGTSLKVKLDNWAQLEKFLARKKFKLPKELIHGTIHCKAGVPEILIEEVYTLLTHREIKSIQDDF-VNFTDYSYQMRLPLVSRSTVSKSIKDNIRLSELLSNPNMLTNELKAEFLILLHMLQRKLGRKLNPEWFDVKPTVGE 240
The following BLAST results are available for this feature:
BLAST of TCONS_00055543-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPAT46.981e-5743.98Spermatogenesis-associated protein 4 OS=Homo sapie... [more]
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