TCONS_00055681-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055681-protein
Unique NameTCONS_00055681-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length113

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055681-protein ID=TCONS_00055681-protein|Name=TCONS_00055681-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
FKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKI
HAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTL
KRHLRTHTGERQI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035036XLOC_035036Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055681TCONS_00055681Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
FKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQI102030405060708090100110Score = Score = Score = Score = Score = 17.267Score = 13.63Score = 17.683Score = 16.747Score = Score = Expect = 6.4E-23 / Score = 81.6SequenceSM00355PS00028PS00028PS00028PS00028PS50157PS50157PS50157PS50157SSF57667SSF57667G3DSA:2.40.155.10G3DSA:2.20.25.10PF00096G3DSA:3.30.160.60G3DSA:3.30.160.60G3DSA:3.30.40.10
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 29..51
e-value: 5.7E-4
score: 29.2
coord: 1..23
e-value: 3.1E-4
score: 30.1
coord: 57..79
e-value: 1.0E-5
score: 35.0
coord: 85..107
e-value: 4.0E-4
score: 29.7
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 3..23
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 59..79
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 31..51
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 87..107
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 57..84
score: 17.267
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 29..56
score: 13.63
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 1..28
score: 17.683
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 85..112
score: 16.747
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 38..94
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 1..51
NoneNo IPR availableGENE3D2.40.155.10coord: 77..112
e-value: 6.4E-23
score: 81.6
NoneNo IPR availableGENE3D2.20.25.10coord: 54..64
e-value: 1.4E-5
score: 24.5
coord: 22..33
e-value: 2.6E-6
score: 26.9
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 1..23
e-value: 3.1E-5
score: 24.1
coord: 57..79
e-value: 1.1E-7
score: 31.8
coord: 85..107
e-value: 5.1E-6
score: 26.5
coord: 29..51
e-value: 6.0E-5
score: 23.2
NoneNo IPR availableGENE3D3.30.160.60coord: 1..21
e-value: 2.0E-13
score: 49.7
NoneNo IPR availableGENE3D3.30.160.60coord: 65..76
e-value: 3.7E-12
score: 45.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 34..53
e-value: 4.9E-19
score: 67.6

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055681-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
FKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQI102030405060708090100110Expect = 4.87e-38 / Id = 56.76Expect = 1.25e-33 / Id = 56.76Expect = 4.33e-33 / Id = 56.76Expect = 8.98e-33 / Id = 56.76Expect = 2.60e-32 / Id = 56.76Expect = 1.89e-31 / Id = 56.76Expect = 2.37e-31 / Id = 56.76Expect = 7.38e-31 / Id = 56.76Expect = 1.90e-29 / Id = 56.76Expect = 9.15e-21 / Id = 56.76Expect = 4.95e-27 / Id = 56.76SequenceZN567
Match NameE-valueIdentityDescription
ZN5674.873e-3856.76Zinc finger protein 567 OS=Homo sapiens GN=ZNF567 ... [more]
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