Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00055999-protein ID=TCONS_00055999-protein|Name=TCONS_00055999-protein|organism=Clytia hemisphaerica|type=polypeptide|length=654bp GEINIKMGISGLTSYINNLQQTMFKERIKLNSSCLVIDGFALFYALMKTA RRREFGGDYDLLREHLNIFFSKLSKMDIQVYVVLDGGNNIDLKKATIEKR KVQMIEKVTEFNRLGLGYRQIGDLPIPLLSMSLFREVMEIHENVKYIVCD QEADLLVASLANQLDGYVVTNDSDFFLLDLKKGLITITSLCDSIKQSQPY CTIYKQQNLSQYLGISPDLLPIIALVLGNDYSVDCYRLQLLSLMGIQPRD KIDVKIEHIMKYLKGAVSVDRLLQTLCCGNEEMQSQLSKELEEYNVHQFD GLSQEYIGYFETQQKETAARNFFDSKNKLKNFIDQLVRAGLIDACVLDLL NYKTHFVNVQCELIAKRCTSVCSSVLRRYLYGMLLKQDEIVVEYTRSGQQ YRPKMVRPSNDLPSLDELWSRSEEERQSFFLDLLDIPLEGRGAIISPAHQ SSLFIITLQYFTQVHSTSEDQTNAFLEMHLILRNGNRCFDVPHLDQAMLH VYSSFHTVFYYINLINTLLGEPFVTPKASQLMSGSVFQSLCQRGNKDFKA DYAKEDLTDLETYQNFILPNMMDKVQPRSSSKKNNQHHHHYHHHRHHQGL KNSQLSNDALPRKPASQSGSKKSTFPSTNKKPSAQASNKKPSNRFQLLSI SDDE Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term Definition
GO:0006281 DNA repair
Vocabulary: Molecular Function
Term Definition
GO:0004518 nuclease activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0006281
DNA repair
molecular_function
GO:0004518
nuclease activity
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 300 350 400 450 500 550 600 650 Expect = 0.003 / Score = 13.4 Expect = 1.4E-6 / Score = 28.6 Expect = 2.2E-9 / Score = 37.1 Score = Expect = 7.6E-20 / Score = 71.0 Score = Sequence SM00485 PF00752 PF12813 mobidb-lite G3DSA:3.40.50.1010 SSF88723
IPR Term IPR Description Source Source Term Source Description Alignment
IPR006085 XPG N-terminal SMART SM00485 xpgn3 coord: 7..107 e-value: 0.003 score: 13.4
IPR006085 XPG N-terminal PFAM PF00752 XPG_N coord: 7..102 e-value: 1.4E-6 score: 28.6
None No IPR available PFAM PF12813 XPG_I_2 coord: 130..237 e-value: 2.2E-9 score: 37.1
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 575..654
IPR029060 PIN domain-like GENE3D 3.40.50.1010 coord: 7..215 e-value: 7.6E-20 score: 71.0
IPR029060 PIN domain-like SUPERFAMILY 88723 PIN domain-like coord: 7..190
Blast
BLAST of TCONS_00055999-protein vs. Swiss-Prot (Human)
Match:
ASTE1 (Protein asteroid homolog 1 OS=Homo sapiens GN=ASTE1 PE=1 SV=1)
HSP 1 Score: 104.76 bits (260), Expect = 2.441e-23
Identity = 79/235 (33.62%), Postives = 124/235 (52.77%), Query Frame = 0
Query: 7 MGISGLTSYINNLQQTMFKERIKLNSSCLVIDGFALFYALMKTARRR-EFGGDYDLLREHLNIFFSKLSKMDIQVYVVLDGGNNI-DLKKATIEKRKVQMIEKVTEFNRLGLGYRQIGDLPIPLLSMSLFREVMEIHENVKYIVCDQEADLLVASLANQLDGYVVTNDSDFFLLDLKKGLITITSL----CDSIKQSQPYCTIYKQQNLSQYL----GISPDLLPIIALVLGNDY 231
MGI GL S++ + F + +KL + +VIDG+ALF+ L ++ +GGDYD + + FF L +I YVVLDGG +I D K T++ R + I+ + G GY PLL +F +V+ I V ++ C EAD + +LAN + V+++DSDF + DLK G + S ++IK +Q Y K +L + ++ LLP+ A++ GND+
Sbjct: 1 MGIRGLMSFVEDHSNEFFTD-LKLRDTKIVIDGYALFHRLCFSSNLDLRYGGDYDSFADVVQKFFESLFACNICPYVVLDGGCDISDKKLTTLKDRAREKIQMAHSLSVGGSGYV------CPLLIREVFIQVL-IKLRVCFVQCFSEADRDIMTLANHWNCPVLSSDSDFCIFDLKTGFCPLNSFQWRNMNTIKGTQNYIPA-KCFSLDAFCHHFSNMNKALLPLFAVLCGNDH 226
The following BLAST results are available for this feature: