TCONS_00056310-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056310-protein
Unique NameTCONS_00056310-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length241

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056310-protein ID=TCONS_00056310-protein|Name=TCONS_00056310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
RREEQNTEETLAKSPSFSMTKSLNDSKLLDATASIKKMALVDTSSLDDDG
TGSIAASVRIEKALSEAPSGTLTTTHQVGMTRTIAMLSKLWLITAECFIN
LEDATQAGGCILEASSIFPLSPDVLYMRGRLNELQENTLEAIACYESALS
IHPHHKAARQRVGLLYHERGDCALAEKILRACILYDTSNHTAWNDLGIVL
ESTGRFDESADCFLTALRLEGSAPISSFTSIPRAFRAFDTS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035474XLOC_035474Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056310TCONS_00056310Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 190..223
e-value: 0.049
score: 22.8
coord: 156..189
e-value: 240.0
score: 2.8
coord: 122..155
e-value: 0.0013
score: 28.0
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 123..153
e-value: 0.021
score: 14.9
coord: 191..220
e-value: 0.038
score: 14.1
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 190..223
score: 8.26
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 122..155
score: 8.526
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 156..189
score: 5.074
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 155..227
e-value: 1.7E-15
score: 56.4
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 54..154
e-value: 1.1E-11
score: 44.0
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 90..218
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 88..223
score: 17.85

Blast
[Close]
BLAST of TCONS_00056310-protein vs. Swiss-Prot (Human)
Match: TTC7B (Tetratricopeptide repeat protein 7B OS=Homo sapiens GN=TTC7B PE=1 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 1.044e-41
Identity = 84/215 (39.07%), Postives = 125/215 (58.14%), Query Frame = 0 
Query:   26 SKLLDAT-ASIKKMALVDTSSLDDDGTGSI----AASVRIEKALSEAPSGTLTTTHQVGMTRTIAMLSKLWLITAECFINLEDATQAGGCILEASSIFPLSPDVLYMRGRLNELQENTLEAIACYESALSIHPHHKAARQRVGLLYHERGDCALAEKILRACILYDTSNHTAWNDLGIVLESTGRFDESADCFLTALRLEGSAPISSFTSIPRAF 235
            S LLD T A  +++  +      D  TGS+     A+ R+E+ALSE  S   ++  + G       L+++WL  AE +I +    +A  C  EA+++FP+S +VLYMRG++ EL+ +  EA   YE AL+I P H  + QR+ L+ H+ G  +LAEKILR  +  +++ H  WN LG VL++ G    + +CFLTAL LE S+P   FT IPR  
Sbjct:  629 SSLLDRTIADRRQLNTITLPDFSDPETGSVHATSVAASRVEQALSEVASSLQSSAPKQGPLHPWMTLAQIWLHAAEVYIGIGKPAEATACTQEAANLFPMSHNVLYMRGQIAELRGSMDEARRWYEEALAISPTHVKSMQRLALILHQLGRYSLAEKILRDAVQVNSTAHEVWNGLGEVLQAQGNDAAATECFLTALELEASSPAVPFTIIPRVL 843
The following BLAST results are available for this feature:
BLAST of TCONS_00056310-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTC7B1.044e-4139.07Tetratricopeptide repeat protein 7B OS=Homo sapien... [more]
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