TCONS_00056329-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056329-protein
Unique NameTCONS_00056329-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length153

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056329-protein ID=TCONS_00056329-protein|Name=TCONS_00056329-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL
EDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKNYTTPKKIKHKRKKVKL
AVLKYYKIDDNGKITRLRKECPSESCGAGVFMAQHFDRQYCGKCCLTYSF
KKE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035484XLOC_035484Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056329TCONS_00056329Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin
IPR002906Ribosomal_S27a
IPR000626Ubiquitin_dom
IPR019954Ubiquitin_CS
IPR029071Ubiquitin-rel_dom
IPR011332Ribosomal_zn-bd
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0005515 protein binding
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019956UbiquitinPRINTSPR00348UBIQUITINcoord: 32..52
score: 95.05
coord: 11..31
score: 84.16
coord: 53..74
score: 92.03
IPR002906Ribosomal protein S27aSMARTSM01402Ribosomal_S27_2coord: 102..147
e-value: 1.7E-29
score: 114.0
IPR002906Ribosomal protein S27aPFAMPF01599Ribosomal_S27coord: 102..147
e-value: 2.3E-28
score: 98.0
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 1..72
e-value: 9.0E-36
score: 134.8
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 3..74
e-value: 2.3E-34
score: 116.9
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 1..76
score: 30.888
NoneNo IPR availableGENE3D3.10.20.90coord: 1..105
e-value: 1.6E-46
score: 156.3
NoneNo IPR availableCDDcd01803Ubiquitincoord: 1..76
e-value: 8.37921E-53
score: 163.117
IPR019954Ubiquitin conserved sitePROSITEPS00299UBIQUITIN_1coord: 27..52
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 1..93
IPR011332Zinc-binding ribosomal proteinSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 100..152

Blast
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BLAST of TCONS_00056329-protein vs. Swiss-Prot (Human)
Match: RS27A (Ubiquitin-40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A PE=1 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 1.740e-89
Identity = 138/152 (90.79%), Postives = 145/152 (95.39%), Query Frame = 0 
Query:    1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKNYTTPKKIKHKRKKVKLAVLKYYKIDDNGKITRLRKECPSESCGAGVFMAQHFDRQYCGKCCLTYSFKK 152
            MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG KKRKKK+YTTPKK KHKRKKVKLAVLKYYK+D+NGKI+RLR+ECPS+ CGAGVFMA HFDR YCGKCCLTY F K
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 152
The following BLAST results are available for this feature:
BLAST of TCONS_00056329-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS27A1.740e-8990.79Ubiquitin-40S ribosomal protein S27a OS=Homo sapie... [more]
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