TCONS_00056345-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056345-protein
Unique NameTCONS_00056345-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length251

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056345-protein ID=TCONS_00056345-protein|Name=TCONS_00056345-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
MDVLLHHPQQSTLIPSPNSSSNVNKKKSRLSYSITFKLAAVRHAESHGNR
ATARYLGINEKQIRDWRSKKTSLMSTNANAKRLKGAGRQGGGETKNRHKS
TNSLPTNVNLKAKVQPFTPSPPSHRYDFSWWRQCLPRSNTTILKDEIHVP
QQQKSYATLSPQTQTAQTNNNNNYVRHSIKSIMASSHTSPTKAESSSQPT
ITSQFHHHSPTKKNDQEFKDKVSCALALLELKKTNTQSFFMNTHQWLQSE
L
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035498XLOC_035498Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056345TCONS_00056345Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018586Brinker_DNA-bd
IPR011991WHTH_DNA-bd_dom
IPR010921Trp_repressor/repl_initiator
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018586Brinker DNA-binding domainPFAMPF09607BrkDBDcoord: 28..78
e-value: 1.0E-6
score: 28.3
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 23..103
e-value: 2.1E-8
score: 33.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..216
IPR010921Trp repressor/replication initiatorSUPERFAMILY48295TrpR-likecoord: 24..70

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056345-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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