TCONS_00056524-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056524-protein
Unique NameTCONS_00056524-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length458

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056524-protein ID=TCONS_00056524-protein|Name=TCONS_00056524-protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp
RYKMQRQISLHRKAMQQAHIIKTKQKVFINVQGSKYETYEGTLQQFPNTL
LGDPVARSYYYSTQLKAYYFDIKPELFEAVLFFYQSSGILSKPTFSSDVE
FKQSLQFFGLIKSNKKKIDVNEMTFRDKLWDILEHPHRSKIGMYGAYISF
AIILISVAMFCWETEWHRGRPHSPHERKSTWFIGECLYITFFAIEYLLRL
WSSPNRIRFAVTFLGIIDLFSIVPFFIALFYSFYSQISNLRILRLLQILR
IIKLSRYNSGLKILAQAILSCRRQMFSLTILFMITIVFVSTFVYVAESDV
IDGKGFESIPETMWFAVISMTTVGYGDVVPKTTLGKLSGAVGIFMGTVVL
FHLFLPIYLMYFSLFYGQEKEKNRLEQEAKHKAKILKGFSEATISSPETF
YFRKKNLTLSPAVSSRMSRLSVDSDSSTSDIDLHPEDGNYSLAVPVRRLA
GTSSSYVL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035604XLOC_035604Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056524TCONS_00056524Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR005821Ion_trans_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
GO:0051260protein homooligomerization
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 209..229
score: 39.81
coord: 67..86
score: 41.44
coord: 245..271
score: 39.4
coord: 274..297
score: 26.16
coord: 306..328
score: 62.03
coord: 183..206
score: 35.44
coord: 136..164
score: 33.95
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 147..368
e-value: 3.2E-26
score: 92.0
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 27..112
e-value: 9.0E-16
score: 57.9
NoneNo IPR availableGENE3D1.10.287.70coord: 267..414
e-value: 5.0E-18
score: 64.5
NoneNo IPR availableGENE3D1.20.120.350coord: 143..266
e-value: 2.9E-25
score: 88.0
NoneNo IPR availableGENE3D3.30.710.10coord: 24..125
e-value: 3.0E-13
score: 49.2
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 142..354
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 26..112

Blast
[Close]
BLAST of TCONS_00056524-protein vs. Swiss-Prot (Human)
Match: KCNA2 (Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.856e-63
Identity = 135/400 (33.75%), Postives = 215/400 (53.75%), Query Frame = 0 
Query:   25 QKVFINVQGSKYETYEGTLQQFPNTLLGDPVARSYYYSTQLKAYYFDIKPELFEAVLFFYQSSGILSKPT------FSSDVEF----KQSLQFF----GLIKSNKKKIDVNEMTFRDKLWDILEHPHRSKIGMYGAYISFAIILISVAMFCWET--------EWHRGRPHSPHE--------RKST-----WFIGECLYITFFAIEYLLRLWSSPNRIRFAVTFLGIIDLFSIVPFFIALFYSFYSQISN------------LRILRLLQILRIIKLSRYNSGLKILAQAILSCRRQMFSLTILFMITIVFVSTFVYVAESDVIDGKGFESIPETMWFAVISMTTVGYGDVVPKTTLGKLSGAVGIFMGTVVLFHLFLPIYLMYFSLFYGQEKEKNRLEQ 377
            ++V IN+ G ++ET   TL QFP TLLGDP  R  Y+      Y+FD     F+A+L++YQS G L +P       FS ++ F    +++++ F    G IK  ++ +  NE  F+ ++W + E+P  S      A +S  +ILIS+  FC ET        E   G   + H         ++ST     +FI E L I +F+ E+L+R ++ P++  F    + IID+ +I+P+FI L      +  +            LR++RL+++ RI KLSR++ GL+IL Q + +  R++  L     I ++  S+ VY AE+D  + + F SIP+  W+AV+SMTTVGYGD+VP T  GK+ G++    G V+   L +P+ +  F+ FY +E E     Q
Sbjct:   33 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENE--FQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERESQ-FPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAG-VLTIALPVPVIVSNFNYFYHRETEGEEQAQ 428
The following BLAST results are available for this feature:
BLAST of TCONS_00056524-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA22.856e-6333.75Potassium voltage-gated channel subfamily A member... [more]
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