TCONS_00056819-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056819-protein
Unique NameTCONS_00056819-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length398

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056819-protein ID=TCONS_00056819-protein|Name=TCONS_00056819-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp
MSIIGMILPTVLLYGLYLSCTKRSCTMLKLPAIPSCEKFFNWKSTGYVFG
WFIFQMVLSAIPLGKVVTGPVLADGKARQHCLNGLFQFAISMATIGGLVF
YGKLPFKYLTVNYLSLITAAAIYSFIVSIVVYFASRNASPKEPSNGFFSD
FMKGRAASPRIGNFDIKMYAFKTGAVSWAAYNVCLLVREMSNGKDLTKTN
PGFLLLVAFQIWYALDLLVFEESLLYTATLSKDKMGYFAFDMMFGITPFY
GTLQTRYLVSHPVALPWYCFVIPIMLHVVGFYIYRTSLMQKFLFRKDFKK
ASELGVKSIPTKCGRNLLVDGFWGSLRHPNYTGDFMMNVSWGIICGVTHL
LPWVAPIALFALLIQMATADDKGCSEKYGASWDEYRERVKYKFIPYII
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035795XLOC_035795Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056819TCONS_00056819Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001171Ergosterol_biosynth_ERG4_ERG24
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001171Ergosterol biosynthesis ERG4/ERG24PFAMPF01222ERG4_ERG24coord: 42..397
e-value: 2.3E-69
score: 234.2

Blast
[Close]
BLAST of TCONS_00056819-protein vs. Swiss-Prot (Human)
Match: LBR (Lamin-B receptor OS=Homo sapiens GN=LBR PE=1 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 8.324e-70
Identity = 132/386 (34.20%), Postives = 212/386 (54.92%), Query Frame = 0 
Query:   20 CTKRSCTMLKLPA-IPSCEKFFNWKSTGYVFGWFIFQMVLSAIPLGKVVTGPVLADGKARQHCLNGLFQFAISMATIGGLVFYGKLPFKYLTVNYLSLITAAAIYSFIVSIVVYFASRNA-----SPKEPSNGFFSDFMKGRAASPRIGNFDIKMY-AFKTGAVSWAAYNVCLLVREMSNGKDLTKTNPGFLLLVAFQIWYALDLLVFEESLLYTATLSKDKMGY-FAFDMMFGITPFYGTLQTRYLVSHPVALPWYCFVIPIMLHVVGFYIYRTSLMQKFLFRKDFKKASELGVKSIPTKCGRNLLVDGFWGSLRHPNYTGDFMMNVSWGIICGVTHLLPWVAPIALFALLIQMATADDKGCSEKYGASWDEYRERVKYKFIPYI 397
            C ++  ++L  P  +P+  + +  +  G    WF+ Q++   +P+GKVV G  L DG+  ++ LNG + F ++ A IG  +F G + F Y+  ++L    AA ++  ++S+ +Y  S  A     SP    N  + DF  GR  +PRIG FD+K +   + G + W   N+ +L+ EM   +D    +   +L+ +FQ+ Y +D L  EE+LL T  +  D  G+  AF  +  + PF  + Q  YLVSHP  + W    + I+L + G+ I+R +  QK  FRK+        +K+I T  G+NLLV G+WG +RHPNY GD +M ++W + CG  H+LP+   I    LL+     D+  C +KYG +W++Y +RV Y+  PYI
Sbjct:  233 CKQKDPSLLNFPPPLPALYELWETRVFGVYLLWFLIQVLFYLLPIGKVVEGTPLIDGRRLKYRLNGFYAFILTSAVIGTSLFQG-VEFHYVYSHFLQFALAATVFCVVLSVYLYMRSLKAPRNDLSPASSGNAVY-DFFIGRELNPRIGTFDLKYFCELRPGLIGWVVINLVMLLAEMKI-QDRAVPSLAMILVNSFQLLYVVDALWNEEALLTTMDIIHDGFGFMLAFGDLVWV-PFIYSFQAFYLVSHPNEVSWPMASLIIVLKLCGYVIFRGANSQKNAFRKNPSDPKLAHLKTIHTSTGKNLLVSGWWGFVRHPNYLGDLIMALAWSLPCGFNHILPYFYIIYFTMLLVHREARDEYHCKKKYGVAWEKYCQRVPYRIFPYI 614
The following BLAST results are available for this feature:
BLAST of TCONS_00056819-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LBR8.324e-7034.20Lamin-B receptor OS=Homo sapiens GN=LBR PE=1 SV=2[more]
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