TCONS_00056889-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056889-protein
Unique NameTCONS_00056889-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056889-protein ID=TCONS_00056889-protein|Name=TCONS_00056889-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MAFIPPIRNYFLRDENYQDTKRPPGDTLFPLVLRFGELVRKIWNPFNFKS
HVSPHEMLQAVVSCSRKKFQFTEQGDPIEFLSWFINSIHLTLNGTKKAKS
SVIYKSFRGEMKQWSRKLPPTDDKDVIDKLLEKEEYKEKELTTPFLYLTL
DIPASPLFKDQLEQNAIPQVPLLSLLQKFNGHQEKDYKTYYDTTMKRFSL
TKLPKYLILFIKRFNNNTFFVEKNPTIINFPVKGLDMKDFLSEDEEVQKA
HPHTSYDLVANISHEGEPGQGKGTYKLHVLHKGNKQWFEVQDLHLKEILP
PMITLSESYIQIWELQKPKPTKT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035839XLOC_035839Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056889TCONS_00056889Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001394Peptidase_C19_UCH
IPR028889USP_dom
Vocabulary: Biological Process
TermDefinition
GO:0016579protein deubiquitination
Vocabulary: Molecular Function
TermDefinition
GO:0036459thiol-dependent ubiquitinyl hydrolase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016579 protein deubiquitination
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolasePFAMPF00443UCHcoord: 3..310
e-value: 4.3E-28
score: 98.4
NoneNo IPR availableGENE3D3.90.70.10coord: 1..318
e-value: 9.1E-48
score: 162.2
NoneNo IPR availableSUPERFAMILY54001Cysteine proteinasescoord: 2..314
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 1..316
score: 27.543

Blast
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BLAST of TCONS_00056889-protein vs. Swiss-Prot (Human)
Match: SNUT2 (U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2)

HSP 1 Score: 378.637 bits (971), Expect = 1.162e-128
Identity = 180/318 (56.60%), Postives = 248/318 (77.99%), Query Frame = 0 
Query:    1 MAFIPPIRNYFLRDENYQDTKRPPGDTLFPLVLRFGELVRKIWNPFNFKSHVSPHEMLQAVVSCSRKKFQFTEQGDPIEFLSWFINSIHLTLNGTKKAKSSVIYKSFRGEMKQWSRKLP----PTDDKDVIDKLLEKEEYKEKELTTPFLYLTLDIPASPLFKDQLEQNAIPQVPLLSLLQKFNGHQEKDYKTYYDTTMKRFSLTKLPKYLILFIKRFNNNTFFVEKNPTIINFPVKGLDMKDFLSEDEEVQKAHPHTSYDLVANISHEGEPGQGKGTYKLHVLHKGNKQWFEVQDLHLKEILPPMITLSESYIQIWE 314
            ++ +PP+RNYFL ++NY++ KRPPGD +F LV RFGEL+RK+WNP NFK+HVSPHEMLQAVV CS+K FQ T+QGD ++FLSWF+N++H  L GTKK K +++   F+G M+ +++KLP    P ++K   ++LL  +EY+E  + + F+YLTLD+P +PL+KD+ EQ  IPQVPL ++L KFNG  EK+YKTY +  +KRF LTKLP YLI  IKRF  N FFVEKNPTI+NFP+  +D++++LS  EEVQ  H +T+YDL+ANI H+G+P +  G+Y++HVLH G  +W+E+QDL + +ILP MITLSE+YIQIW+
Sbjct:  243 LSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKLPHPDLPAEEK---EQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYLS--EEVQAVHKNTTYDLIANIVHDGKPSE--GSYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWK 553
The following BLAST results are available for this feature:
BLAST of TCONS_00056889-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNUT21.162e-12856.60U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sa... [more]
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