TCONS_00058161-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00058161-protein
Unique Name	TCONS_00058161-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	612

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00058161-protein ID=TCONS_00058161-protein|Name=TCONS_00058161-protein|organism=Clytia hemisphaerica|type=polypeptide|length=612bp
MIRSSVISRKSKRSQKTRKPMEDVLSQYADLIQLNENEVYRLENKCEDLV
DFSKLDEKCRRQQYPIFEFIKTEKKFIQKIHAICKLFCQIFKCLKNDGYL
ANFQFEDVFANIEDVFRVNDRIWATSIYTMLEKTRHTKAPIKPSEIFQSF
IYMDDQFQPYLKYSMKFEGCVEKIRQVTKNPKQADEEFTTYLQFCDRKVS
KLSICEGMKIRDLMSDPLSRMMKYPDLLQRVRKYTQEEDEIRFLDLIISK
IKGFLRNMNTEKRRRQENVELQSFVLQELDDQDVWFAGTEEIFWSAKEFL
RAPMKVRTRNHKNTVKEEQQRCLLKRGPMRISLENRRKLDVEAILFSDVL
IIARNRRTNKKLTLVKQLYFLDKVLLKLSEVSSNGVLLIYKNEVGLLSEV
VKLEIWDYNGEVNTRDIWCNKVEIAKRVYLSTLNGTGSTLDIFQQCYNKA
DEHKRKEKENEGLENFKRTSSWLLVGDRVEALRKSRNKQRSISTDSFKRA
LSDPNLLEGLDQLPEEEGESPRNGEITPEPPQIIIVPEEKKFLSLRLKKS
ASKMTVIKKFSLDNSPKSTFFVPEEEDFEEVPRRRSKSFDPPSERAEQSA
DTTSQDSHDTAL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036646	XLOC_036646	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00058161	TCONS_00058161	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000219	DH-domain
IPR011993	PH_dom-like

Vocabulary: **Biological Process**
Term	Definition
GO:0035023	regulation of Rho protein signal transduction

Vocabulary: **Molecular Function**
Term	Definition
GO:0005089	Rho guanyl-nucleotide exchange factor activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035023	regulation of Rho protein signal transduction
molecular_function	GO:0005089	Rho guanyl-nucleotide exchange factor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000219	Dbl homology (DH) domain	SMART	SM00325	RhoGEF_3	coord: 65..260 e-value: 1.4E-14 score: 64.5
IPR000219	Dbl homology (DH) domain	PFAM	PF00621	RhoGEF	coord: 66..259 e-value: 2.0E-21 score: 77.0
IPR000219	Dbl homology (DH) domain	PROSITE	PS50010	DH_2	coord: 61..261 score: 20.784
IPR000219	Dbl homology (DH) domain	SUPERFAMILY	48065	DBL homology domain (DH-domain)	coord: 51..273
IPR011993	PH domain-like	GENE3D	2.30.29.30		coord: 302..429 e-value: 1.3E-7 score: 31.4
IPR011993	PH domain-like	SUPERFAMILY	50729	PH domain-like	coord: 314..393
None	No IPR available	GENE3D	1.20.900.10		coord: 53..265 e-value: 4.0E-27 score: 94.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 514..533
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 565..612

Blast

[Close]

BLAST of TCONS_00058161-protein vs. Swiss-Prot (Human)
Match: PKHG5 (Pleckstrin homology domain-containing family G member 5 OS=Homo sapiens GN=PLEKHG5 PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 8.533e-39
Identity = 106/392 (27.04%), Postives = 201/392 (51.28%), Query Frame = 0

Query:   37 NEVYRLENKCEDLVD-FSKLDEKCRRQQYPIFEFIKTEKKFIQKIHAICKLFCQIFKCLKNDGYLANFQFEDVFANIEDVFRVNDRIWATSIYTMLEKTRHTKAPIKPSEIFQSFIYMDDQFQPYLKYSMKFEGCVEKIRQVTKNPKQADEEFTTYLQFCDRKVSKLSICEGMKIRDLMSDPLSRMMKYPDLLQRVRKYTQEEDEIRFLDLIISKIKGFLRNMNTEKRRRQENVELQSFVLQELDDQDVWFAGTEEIFWSAKEFLR----APMKVRTRNHKNTVKEEQQRCLLKRGPMRISLENRRKLDVEAILFSDVLIIARNRRTNKKLTLVKQLYFLDKVLLKLSEVSSNG-VLLIYKNEVGLLSEVVKLEIWDYNGEVNTRDIWCNKV 422
            N   RLE+   +L+D   KL  +   QQ  ++E + TE  +I+K+  I  LF      L+  G L   + E +F+NI ++ +++ R+WA+ +  +LEK R T+A ++P +  + F      F+PY++Y M+ EGC+E +R + ++    ++ F  Y+ + ++       C+ +K+ D+++ P  R+ KYP LL+ V + T+E      +  +I  ++ F+ ++N   R+RQE   L + V+  +D  +V  + ++E+    KEFL     AP+             E+ R LL  G +R+      K+DV   LF+D+L++ +  +  ++  +++    +DK++ +  E+   G  LLIY NE       V    +  +G+   R  W + +
Sbjct:  367 NACLRLEDSWRELIDGHEKLTRRQCHQQEAVWELLHTEASYIRKLRVIINLFLCCLLNLQESGLLCEVEAERLFSNIPEIAQLHRRLWASVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYCMEEEGCMEYMRGLLRD----NDLFRAYITWAEKHPQ----CQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTEEPRAKEAVVAMIGSVERFIHHVNACMRQRQERQRLAA-VVSRIDAYEVVESSSDEVDKLLKEFLHLDLTAPIP--------GASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLLVTKAVKKAERTRVIRPPLLVDKIVCR--ELRDPGSFLLIYLNE---FHSAVGAYTFQASGQALCRG-WVDTI 735

The following BLAST results are available for this feature:

BLAST of TCONS_00058161-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00058161-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PKHG5	8.533e-39	27.04	Pleckstrin homology domain-containing family G mem...	[more]

You are here

TCONS_00058161-protein (polypeptide) - C. hemisphaerica