TCONS_00058356-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058356-protein
Unique NameTCONS_00058356-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length247

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058356-protein ID=TCONS_00058356-protein|Name=TCONS_00058356-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
MEGGKLSKLKAKLAEISNQIDDADGRKQDHKAATIEAQSRLEKAEGEVQS
FERRIKLLEKELDDVNARIEENEGKLADVKSNLDTLEEGRKELEEKETSG
DERIQTLEDEVKEAKLKLEESNTKKVEAARKKVVIQRDLDKTKSKAEQLE
ERVESLQGTIDETSSRLRELEEREGESAEKEEQNAENLIVLEGRFKDAEV
RYEAAERQCNVLSNNIKEAKSEIESWNAKSKEIEDEMEAMDDCDIDD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036765XLOC_036765Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058356TCONS_00058356Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000533Tropomyosin
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 6..236
NoneNo IPR availableGENE3D1.20.5.340coord: 193..242
e-value: 2.6E-4
score: 20.5
coord: 127..192
e-value: 3.5E-5
score: 23.3
coord: 6..64
e-value: 7.9E-7
score: 28.6
coord: 65..126
e-value: 6.6E-6
score: 25.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..185
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 223..247
NoneNo IPR availableSUPERFAMILY57997Tropomyosincoord: 5..240
IPR000533TropomyosinPRINTSPR00194TROPOMYOSINcoord: 138..161
score: 24.64
coord: 83..103
score: 31.62
coord: 47..64
score: 53.13
coord: 194..219
score: 38.09
coord: 108..136
score: 43.69
IPR000533TropomyosinPFAMPF00261Tropomyosincoord: 12..239
e-value: 7.2E-39
score: 133.5

Blast
[Close]
BLAST of TCONS_00058356-protein vs. Swiss-Prot (Human)
Match: TPM1 (Tropomyosin alpha-1 chain OS=Homo sapiens GN=TPM1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.386e-16
Identity = 65/201 (32.34%), Postives = 114/201 (56.72%), Query Frame = 0 
Query:   44 AEGEVQSFERRIKLLEKELDDVNARIEENEGKLADVKSNLDTLEEGRKELEEKETSGDERIQTLEDEVKEAKLKLEESNTKKVEAARKKVVIQRDLDKTKSKAEQLEERVESLQGTIDETSSRLRELEEREGESAEKEEQNAENLIVLEGRFKDAEVRYEAAERQCNVLSNNIKEAKSEIESWNAKSKEIEDEME-AMDDC 243
            AE +V S  RRI+L+E+ELD    R+     KL + +   D  E G K +E +    +E+++  E ++KEAK   E+++ K  E ARK V+I+ DL++ + +AE  E +   L+  +   ++ L+ LE +  + ++KE++  E + VL  + K+AE R E AER    L  +I + + E+ +   K K I +E++ A++D 
Sbjct:   81 AEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281
The following BLAST results are available for this feature:
BLAST of TCONS_00058356-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TPM12.386e-1632.34Tropomyosin alpha-1 chain OS=Homo sapiens GN=TPM1 ... [more]
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