TCONS_00058672-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058672-protein
Unique NameTCONS_00058672-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length282

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058672-protein ID=TCONS_00058672-protein|Name=TCONS_00058672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
LINFVPSAVTPPSTTGTLLDIASEPSPVNNGGISLDFPTSTTPATNDSVS
KFICKSNGILFENDIIQIGIKSEYRQGVGRLGIFYGNKTTVPLTNFLVQL
HNNPDVSQKMAVELQPISNVIDNGAQIQQMIKCEIIDVFDEIPVLTVSFS
VGTAPQQLLLQLPVFLTKCSVSAEMTNTDFFNRWKGLSAPGQESQKIFNA
NFPIDTEASKLKLVGCSMGLLEEIDPNPDNFVTAGIIHTRQGQIGYLLRL
EPNIPAQMYRLTIRASRAGVADILTNVLQDQF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036961XLOC_036961Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058672TCONS_00058672Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008152Clathrin_a/b/g-adaptin_app_Ig
IPR003164Clathrin_a-adaptin_app_sub_C
IPR009028Coatomer/calthrin_app_sub_C
IPR013041Coatomer/clathrin_app_Ig-like
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0030131clathrin adaptor complex
GO:0030117membrane coat
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030131 clathrin adaptor complex
cellular_component GO:0030117 membrane coat
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008152Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomainSMARTSM00809alpha_adaptinc2coord: 50..163
e-value: 3.0E-21
score: 86.6
IPR008152Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomainPFAMPF02883Alpha_adaptinC2coord: 57..158
e-value: 3.2E-17
score: 62.7
NoneNo IPR availableGENE3D2.60.40.1230coord: 38..169
e-value: 3.1E-42
score: 143.3
NoneNo IPR availableGENE3D3.30.310.10coord: 171..282
e-value: 5.4E-34
score: 116.2
IPR003164Clathrin adaptor, alpha-adaptin, appendage, C-terminal subdomainPFAMPF02296Alpha_adaptin_Ccoord: 173..276
e-value: 6.5E-34
score: 116.4
IPR009028Coatomer/calthrin adaptor appendage, C-terminal subdomainSUPERFAMILY55711Subdomain of clathrin and coatomer appendage domaincoord: 173..282
IPR013041Coatomer/clathrin adaptor appendage, Ig-like subdomainSUPERFAMILY49348Clathrin adaptor appendage domaincoord: 45..168

Blast
[Close]
BLAST of TCONS_00058672-protein vs. Swiss-Prot (Human)
Match: AP2A2 (AP-2 complex subunit alpha-2 OS=Homo sapiens GN=AP2A2 PE=1 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 5.468e-76
Identity = 117/240 (48.75%), Postives = 160/240 (66.67%), Query Frame = 0 
Query:   43 PATNDSVSKFICKSNGILFENDIIQIGIKSEYRQGVGRLGIFYGNKTTVPLTNFLVQLHNNPDVSQKMAVELQPISNVIDNGAQIQQMIKCEIIDVFDEIPVLTVSFSVGTAPQQLLLQLPVFLTKCSVSAEMTNTDFFNRWKGLSAPGQESQKIFNANFPIDTEASKLKLVGCSMGLLEEIDPNPDNFVTAGIIHTRQGQIGYLLRLEPNIPAQMYRLTIRASRAGVADILTNVLQDQF 282
            P + D+ ++F+CK+NG+LFEN ++QIG+KSE+RQ +GR+ IFYGNKT+    NF   L  + D+   + ++ +P+   ++ GAQ+QQ++  E +  F E PVL + F  G   Q + +QLP+ L K     EM + DFF RWK LS P QE Q IF A  P+DTE +K K++G    LLEE+DPNP NFV AGIIHT+  QIG LLRLEPN+ AQMYRLT+R S+  V+  L  +L  QF
Sbjct:  700 PGSEDNFARFVCKNNGVLFENQLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICSDDLQPNLNLQTKPVDPTVEGGAQVQQVVNIECVSDFTEAPVLNIQFRYGGTFQNVSVQLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDTEVTKAKIIGFGSALLEEVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQMYRLTLRTSKEAVSQRLCELLSAQF 939
The following BLAST results are available for this feature:
BLAST of TCONS_00058672-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AP2A25.468e-7648.75AP-2 complex subunit alpha-2 OS=Homo sapiens GN=AP... [more]
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