TCONS_00059372-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059372-protein
Unique NameTCONS_00059372-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059372-protein ID=TCONS_00059372-protein|Name=TCONS_00059372-protein|organism=Clytia hemisphaerica|type=polypeptide|length=400bp
MGHVLFYSTILLSLAYSFVSSACPKECRCSGKNYVTCIGKNITNEGVKEI
AAQLNETELEHLYFTENKIDHFEVSYFVNFTKLKNIGLRKNLLTKVPANV
SILIPSITRLGLSYNMINSIVRADFAGYRSIKDLDFKGNGIEKLDANLFQ
DIPRLTDLHFNDNKIKVIKNDTLKGLTELVYINFNGNGVEIIENGVFNNM
TYNEVEVYLRNNKIRTLASGTFGSSQGGMSVKLSGNELTPNSIQPKAFNV
DSLELDNNNLTAVHQDWFASSLNTFSLEGNPLICDCALYQSLVFTGGYFF
GTCNKTYNLNKFSGENKLNCTSCFGNQCQNGAQCQIIDKSNYNCSCTEMH
SGRFCQLRINSDGDDDGIAVGYIILIVVLVVLLLAGLLAVVCYTKNRKGN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037378XLOC_037378Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059372TCONS_00059372Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675L_dom-like
IPR013032EGF-like_CS
IPR000742EGF-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 176..199
e-value: 19.0
score: 10.9
coord: 152..175
e-value: 33.0
score: 9.0
coord: 80..103
e-value: 270.0
score: 1.6
coord: 205..224
e-value: 110.0
score: 4.6
coord: 128..151
e-value: 380.0
score: 0.3
coord: 104..127
e-value: 95.0
score: 5.2
coord: 249..270
e-value: 110.0
score: 4.7
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 58..117
e-value: 1.4E-6
score: 27.9
coord: 130..188
e-value: 3.3E-8
score: 33.1
NoneNo IPR availableGENE3D2.10.25.10coord: 335..362
e-value: 7.0E-5
score: 22.3
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 317..358
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 132..334
e-value: 9.6E-24
score: 83.2
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 18..131
e-value: 4.2E-15
score: 54.8
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 27..289
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 344..355
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 319..356
score: 10.723

Blast
[Close]
BLAST of TCONS_00059372-protein vs. Swiss-Prot (Human)
Match: LRRT1 (Leucine-rich repeat transmembrane neuronal protein 1 OS=Homo sapiens GN=LRRTM1 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 5.246e-18
Identity = 86/341 (25.22%), Postives = 148/341 (43.40%), Query Frame = 0 
Query:   19 VSSACPKECRCSGKNYVTCIGKNITNE---------------GVKEI-AAQLNE-TELEHLYFTENKIDHFEVSYFVNFTKLKNIGLRKNLLTKVPANVSILIPSITRLGLSYNMINSIVRADFAGYRSIKDLDFKGNGIEKLDANLFQDIPRLTDLHFNDNKIKVIKNDTLKGLTELVYINFNGNGVEIIENGVFNNMTYNEVEVYLRNNKIRTLASGTFGSSQGGMSVKLSGNELTPNSIQPKAF----NVDSLELDNNNLTAVHQDWFAS--SLNTFSLEGNPLICD---CALYQSLVFTGGYFFGTCNKTYNLNKFSGENKLNCTSCFGNQCQNGAQ 333
              S CP+ CRC G+  + C   N+T                  + E+ A Q     +L  LY   N I   +   F    ++K + L  N +T++P      +P++  + LSYN + ++    F G R +  L  + N I+ +   +FQD   L  L    N++K +  ++  GL +L  ++   N +  +    F  +  +   + LR NK+  + S +         + LSGNE+    ++P  F    ++ SL+LD+N LT +      S  SL + +L GN   C    CAL   L    G + G   +  +     GE+ L+    F + C++GA+
Sbjct:   35 APSGCPQLCRCEGR-LLYCEALNLTEAPHNLSGLLGLSLRYNSLSELRAGQFTGLMQLTWLYLDHNHICSVQGDAFQKLRRVKELTLSSNQITQLPNTTFRPMPNLRSVDLSYNKLQALAPDLFHGLRKLTTLHMRANAIQFVPVRIFQDCRSLKFLDIGYNQLKSLARNSFAGLFKLTELHLEHNDLVKVNFAHFPRLI-SLHSLCLRRNKVAIVVS-SLDWVWNLEKMDLSGNEI--EYMEPHVFETVPHLQSLQLDSNRLTYIEPRILNSWKSLTSITLAGNLWDCGRNVCALASWLNNFQGRYDGNL-QCASPEYAQGEDVLDAVYAF-HLCEDGAE 368
The following BLAST results are available for this feature:
BLAST of TCONS_00059372-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRRT15.246e-1825.22Leucine-rich repeat transmembrane neuronal protein... [more]
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