TCONS_00059573-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00059573-protein
Unique Name	TCONS_00059573-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1083

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00059573-protein ID=TCONS_00059573-protein|Name=TCONS_00059573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1083bp
IEPAKPIMSSKRKFEESEEAVLEEMNEQASQQVNDEPVKKKKKKKKRASF
NDEDDNTMDLTQNEDVEPREAETGIVERVFVQNFICHKKLEVRLGSNVNF
IIGLNGSGKSAILTALIVGLGGKAAMTDRGSSLKAFIKDGCHSSTVEITL
RNRNTHTDAYKHHEYGDSIIVERKISSEGTGSYKIKNKEGKVVSTKKDEL
VNILDHFNIQIDNPVSILTQNTSRSFLNTSNPKHKYAFFLKATQLERLTD
DYQKIYEEKELTKILLERKQQVIPELKHEMQIHEEKYNDMQQLQKMKKQI
IELKQELSWAHVNESKKAVADADKAHRRYESKLPSYKDAFQNAQDLVEEL
SKSYSEKREELLTFRDNVSAVLSEKDDLTMKHKKMKDGLKKCQNDIRKID
SDIHRAEKDRKHLYDAVEEIKNTVQKDFEAERKAREQALEEKQNLKKQYE
NQLSNTSNYCQQIDANLHDKQRRKNEFQNAIRDKDKDIERKRRQLVEIEN
QKKNKLNVFGEYTSNVLKAIEEYHKQGRFHRKPVGPLGSLITLKDRKWGL
AIEECIGGNMRSYVCHDSHDMNLLRDIFKRTIGNASRGRGSYGGRAQQPS
IILSSFTDAYDISRSRPGRGFLTVLDSLQIDNVVASNTLIDQASIETVLL
IENAKEAEDIMFSEQTRPRNSTKAFSMKGHTIIGGRFSKTYAPKNKRVKF
FVHDAAGSIREIENEMRHLQEEKKATTMSIRQLEGEIQQDRQEKNRTQKK
RLDEQDKINQVKMEIQELQQMEELHAPDVDELERDLAEHVQRISILQENK
ARYTDVYNEKKDELKDHEAVIAQFHERRNQVSAELEELEGNHAGYEEKLR
EGKRKKRHYEDELDKLNEKIQQAERKLENEKKIFETKRDQALEYCVGEEI
QTTRTPNKVDSEINVAQKRIEREESVRGNADEIVKKYYAARLRFDTSKQE
LANCKKNLKAIEKAMERRIARFKDFRRYISRRAQEYFGMLLSQRGYSGKL
TLLHDAEELRIEVNVEQVKGSEVGDSKALSGGERSFSTICFIMALWEAME
APFRCLDEFDVFMDMMNRQISMRMLLKIAKEQM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_037482	XLOC_037482	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00059573	TCONS_00059573	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003395	RecF/RecN/SMC_N
IPR027417	P-loop_NTPase
IPR010935	SMC_hinge

Vocabulary: **Biological Process**
Term	Definition
GO:0051276	chromosome organization

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0005515	protein binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005694	chromosome

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051276	chromosome organization
cellular_component	GO:0005694	chromosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 425..508
None	No IPR available	COILS	Coil	Coil	coord: 702..771
None	No IPR available	COILS	Coil	Coil	coord: 944..964
None	No IPR available	COILS	Coil	Coil	coord: 340..360
None	No IPR available	COILS	Coil	Coil	coord: 779..890
None	No IPR available	COILS	Coil	Coil	coord: 12..32
None	No IPR available	COILS	Coil	Coil	coord: 389..423
None	No IPR available	COILS	Coil	Coil	coord: 266..293
None	No IPR available	GENE3D	1.20.5.50		coord: 771..872 e-value: 4.4E-6 score: 25.9
None	No IPR available	GENE3D	1.20.1170.10		coord: 250..387 e-value: 6.1E-4 score: 18.3
None	No IPR available	GENE3D	3.40.50.300		coord: 873..1083 e-value: 0.0016 score: 17.4
None	No IPR available	GENE3D	1.20.5.990		coord: 388..458 e-value: 4.2E-5 score: 23.4
None	No IPR available	GENE3D	3.40.50.300		coord: 578..770 e-value: 0.17 score: 11.3 coord: 75..249 e-value: 4.1E-27 score: 94.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69
None	No IPR available	CDD	cd03276	ABC_SMC6_euk	coord: 76..233 e-value: 1.17077E-36 score: 137.344
IPR003395	RecF/RecN/SMC, N-terminal	PFAM	PF02463	SMC_N	coord: 76..1079 e-value: 3.4E-21 score: 75.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 76..290 coord: 1017..1080
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 737..840 coord: 916..1081
IPR010935	SMCs flexible hinge	SUPERFAMILY	75553	Smc hinge domain	coord: 500..570

Blast

[Close]

BLAST of TCONS_00059573-protein vs. Swiss-Prot (Human)
Match: SMC6 (Structural maintenance of chromosomes protein 6 OS=Homo sapiens GN=SMC6 PE=1 SV=2)

HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 370/1037 (35.68%), Postives = 591/1037 (56.99%), Query Frame = 0

Query:   71 AETGIVERVFVQNFICHKKL-EVRLGSNVNFIIGLNGSGKSAILTALIVGLGGKAAMTDRGSSLKAFIKDGCHSSTVEITLRNRNTHTDAYKHHEYGDSIIVERKISSEGTGSYKIKNKEGKVVSTKKDELVNILDHFNIQIDNPVSILTQNTSRSFLNTSNPKHKYAFFLKATQLERLTDDYQKIYEEKELTKILLERKQQVIPELKHEMQIHEEKYNDMQQLQKMKKQIIELKQELSWAHVNESKKAV--------------ADADKAHRRYESKLPSYKDAFQNAQDLVEELSKSYSEKREELLTFRDNVSAVLSEKDDLTMKHKKMKDGLKKCQNDIRKIDSDIHRAEKDRKHLYDAVEEIKNTVQKDFEAERKAREQALEEKQNLKKQYENQLSNTSNYCQQIDANLHDKQRRKNEFQNAIRDKDKDIERKRRQLVEIENQKKNKLNVFGEYTSNVLKAIEEYHKQGRFHRKPVGPLGSLITLKDRKWGLAIEECIGGNMRSYVCHDSHDMNLLRDIFKRTIGNASRGRGSYGGRAQQPSIILSSF-TDAYDI-SRSRPGRGFLTVLDSLQIDNVVASNTLIDQASIETVLLIENAKEAEDIMFSEQTRPRNSTKAFSMKGHTIIGGRFSKTYAPKNKRVKFFVHDAAGSIREIENEMRHLQEEKKATTMSIRQ----LEGEIQQDRQEKNRTQKKRLDEQDKINQVKMEIQELQQMEELHAPDVDELERDLAEHVQRISILQENKARYTDVYNEKKDELKDHEAVIAQFHERRNQVSAELEELEGNHAGYEEKLREGKRKKRHYEDE----LDKLNEKIQQAERKLENEKKIFETKRDQALEYCVGEEIQTTRTPNKVDSEINVAQKRIEREESVRGNADEIVKKYYAARLRFDTSKQELANCKKNLKAIEKAMERRIARFKDFRRYISRRAQEYFGMLLSQRGYSGKLTLLHDAEELRIEVNVEQVKGSEVGDSKALSGGERSFSTICFIMALWEAMEAPFRCLDEFDVFMDMMNRQISMRMLLKIAKEQ 1082
            AE GI+E + ++NF+CH  L   + GSNVNF++G NGSGKSA+LTALIVGLGG+A  T+RGSSLK F+KDG +S+ + ITLRNR    DA+K   YG+SI++++ IS +G+ SYK+K+  G VVST+K+EL+ ILDHFNIQ+DNPVS+LTQ  S+ FL + N   KY FF+KATQLE++ +DY  I E KE TK  + + ++ + ELK +    EE++  +  L  MK  +  LK E++WA VNE +K +              A  D+     + +L   +  +++ QD +E++S+  + +  E +  + +V A     ++  + + +  +  K  +              KD + L   +EE+K +  +  E ER  R++ +   +   K ++NQ ++ +   +Q    +   +    + +    D    +   +RQL E+++ K ++L  FG     +L+AI++ ++QG F  KPVGPLG+ I L+D +  LAIE C+ G +++Y CH+  D  +L+ + KR           Y     +P II+S F  + YD+  R+     F TVL +L+IDN V +N+LID   IETVLLI+N   A  +M S Q  P+N  +AF+  G  +  GR+   Y+ +N R KF   D    I ++ENE+    E K A  ++++Q    LE +I+ + +   R Q    + + KI +   EI+EL+ +EE  + D+  LE +  E+  ++ +++E+  +  +     K    + E        + NQ+S   + L+      + ++   KR KRHYE++    LD LN+K    +R+L+ ++K  E K  QA + C  E I+  ++ + +D EIN  +++I+ E +  G+ +EI+++Y  AR  +     ++   KK +K + + ME R   ++ FRR ++ R + YF  LLSQR Y GK+   H  E L I V   +   +   D +ALSGGERSFST+CFI++LW   E+PFRCLDEFDV+MDM+NR+I+M ++LK+A  Q
Sbjct:   43 AEVGIIESIHLKNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGRAVATNRGSSLKGFVKDGQNSADISITLRNRGD--DAFKASVYGNSILIQQHISIDGSRSYKLKSATGSVVSTRKEELIAILDHFNIQVDNPVSVLTQEMSKQFLQSKNEGDKYKFFMKATQLEQMKEDYSYIMETKERTKEQIHQGEERLTELKRQCVEKEERFQSIAGLSTMKTNLESLKHEMAWAVVNEIEKQLNAIRDNIKIGEDRAARLDRKMEEQQVRLNEAEQKYKDIQDKLEKISEETNARAPECMALKADVVAKKRAYNEAEVLYNRSLNEYKALK--------------KDDEQLCKRIEELKKSTDQSLEPERLERQKKISWLKERVKAFQNQENSVNQEIEQFQQAIEKDKEEHGKIKREELDVKHALSYNQRQLKELKDSKTDRLKRFGPNVPALLEAIDDAYRQGHFTYKPVGPLGACIHLRDPELALAIESCLKGLLQAYCCHNHADERVLQALMKRF----------YLPGTSRPPIIVSEFRNEIYDVRHRAAYHPDFPTVLTALEIDNAVVANSLIDMRGIETVLLIKNNSVARAVMQS-QKPPKNCREAFTADGDQVFAGRY---YSSENTRPKFLSRDVDSEISDLENEV----ENKTAQILNLQQHLSALEKDIKHNEELLKRCQLHYKELKMKIRKNISEIRELENIEEHQSVDIATLEDEAQENKSKMKMVEEHMEQQKENMEHLKSLKIEAENKYDAIKFKINQLSELADPLKDELNLADSEVDNQKRGKRHYEEKQKEHLDTLNKK----KRELDMKEKELEEKMSQARQIC-PERIEVEKSASILDKEINRLRQKIQAEHASHGDREEIMRQYQEARETYLDLDSKVRTLKKFIKLLGEIMEHRFKTYQQFRRCLTLRCKLYFDNLLSQRAYCGKMNFDHKNETLSISVQPGEGNKAAFNDMRALSGGERSFSTVCFILSLWSIAESPFRCLDEFDVYMDMVNRRIAMDLILKMADSQ 1040

The following BLAST results are available for this feature:

BLAST of TCONS_00059573-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00059573-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SMC6	0.000e+0	35.68	Structural maintenance of chromosomes protein 6 OS...	[more]

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TCONS_00059573-protein (polypeptide) - C. hemisphaerica