TCONS_00059885-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059885-protein
Unique NameTCONS_00059885-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059885-protein ID=TCONS_00059885-protein|Name=TCONS_00059885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=515bp
MSFEMDRVEKGKEVKGENSDLYSYDASSNHEANHDRPKADLCCCACLPKR
YLVAIMAFFGFVNVYALRVNLSVAMVAMVSNRTAKYANGTEYTVSPELDW
SPKLQGFVLSSFFYGYIITQIPGGWLATKYGGKNLFGCGVLMTALFTLIT
PPAARCNVYLLVAVRMAEGLFEGVTFPSIYAIWRKWAPPLERSKLATISF
SGPFAGTVLGMPLSGVIANSFGWPWVFYTFGLFGVIWSFFWFALVTDSPC
DHPKISKEELDYIQISLKQDKPEKQVENIPWKDFITSLPVWAIIIAHMTE
NWGWYTLLTQLPTYLKSVLDFNLQAAGFLAALPYLAMVIVVQCAGRLADF
LRSRNMMSTTAVRKMFNSIGFFSQALFMVIVGYTKNKDLAIIGLTLAVGL
GGFAGTGFPINHLDIAPRYASILFGISNCFATLPGIISPLVVGLITPHET
QEEWRVVFFIAASIYLFGLLFYCIFASGEKQEWADGNQYFNHTNDDGEEG
HELLANKSGVDEEDE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037659XLOC_037659Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059885TCONS_00059885Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR027378Nucleotide_channel_N
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1250.20coord: 275..487
e-value: 3.3E-26
score: 91.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 494..515
IPR011701Major facilitator superfamilyPFAMPF07690MFS_1coord: 59..439
e-value: 7.9E-55
score: 186.1
IPR027378Cyclic nucleotide-regulated ion channel, N-terminal domainGENE3D1.20.120.540coord: 192..254
e-value: 0.0031
score: 16.9
coord: 56..185
e-value: 1.6E-28
score: 98.5
IPR020846Major facilitator superfamily domainPROSITEPS50850MFScoord: 52..480
score: 23.585
IPR020846Major facilitator superfamily domainCDDcd06174MFScoord: 55..476
e-value: 6.10319E-45
score: 161.328
IPR020846Major facilitator superfamily domainSUPERFAMILY103473MFS general substrate transportercoord: 39..477

Blast
[Close]
BLAST of TCONS_00059885-protein vs. Swiss-Prot (Human)
Match: VGLU3 (Vesicular glutamate transporter 3 OS=Homo sapiens GN=SLC17A8 PE=1 SV=1)

HSP 1 Score: 452.981 bits (1164), Expect = 1.832e-154
Identity = 217/455 (47.69%), Postives = 302/455 (66.37%), Query Frame = 0 
Query:   35 DRPKADLCCCAC--LPKRYLVAIMAFFGFVNVYALRVNLSVAMVAMVSNRTAKYANGTEYTVSPELDWSPKLQGFVLSSFFYGYIITQIPGGWLATKYGGKNLFGCGVLMTALFTLITPPAARCNVYLLVAVRMAEGLFEGVTFPSIYAIWRKWAPPLERSKLATISFSGPFAGTVLGMPLSGVIANSFGWPWVFYTFGLFGVIWSFFWFALVTDSPCDHPKISKEELDYIQISLKQDKPEKQVE--NIPWKDFITSLPVWAIIIAHMTENWGWYTLLTQLPTYLKSVLDFNLQAAGFLAALPYLAMVIVVQCAGRLADFLRSRNMMSTTAVRKMFNSIGFFSQALFMVIVGYTKNKDLAIIGLTLAVGLGGFAGTGFPINHLDIAPRYASILFGISNCFATLPGIISPLVVGLITPHETQEEWRVVFFIAASIYLFGLLFYCIFASGEKQEWAD 485
             RP   LC C C  LPKRY++AIM+  GF   + +R NL VA+V MV+N T  Y +G     + + +W P+  G +  SFF+GYI+TQIPGG+++ K+    +FG  + +T+   +  P AAR +   ++ VR+ +GL EGVT+P+ + +W KWAPPLERS+LAT SF G +AG V+ MPL+GV+    GW  VFY +G+FG+IW  FW     + P  HP IS EE  YI+ S+ +      +   + PWK F TSLPV+AII+A+   +W +Y LL   P Y + V  F +   G L+A+P++ M IVV   G+LAD+LRSR +++TTAVRK+ N  GF  +A  +++VG++  K +AI  L LAVG  GFA +GF +NHLDIAPRYASIL GISN   TL G++ PL+VG +T H+T+EEW+ VF IAA ++  G++FY +FASGEKQEWAD
Sbjct:   58 SRPSPPLCDCHCCGLPKRYIIAIMSGLGFCISFGIRCNLGVAIVEMVNNSTV-YVDGKPEIQTAQFNWDPETVGLIHGSFFWGYIMTQIPGGFISNKFAANRVFGAAIFLTSTLNMFIPSAARVHYGCVMCVRILQGLVEGVTYPACHGMWSKWAPPLERSRLATTSFCGSYAGAVVAMPLAGVLVQYIGWSSVFYIYGMFGIIWYMFWLLQAYECPAAHPTISNEEKTYIETSIGEGANVVSLSKFSTPWKRFFTSLPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFAISKVGLLSAVPHMVMTIVVPIGGQLADYLRSRQILTTTAVRKIMNCGGFGMEATLLLVVGFSHTKGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPLIVGAMTRHKTREEWQNVFLIAALVHYSGVIFYGVFASGEKQEWAD 511
The following BLAST results are available for this feature:
BLAST of TCONS_00059885-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VGLU31.832e-15447.69Vesicular glutamate transporter 3 OS=Homo sapiens ... [more]
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