TCONS_00060063-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060063-protein
Unique NameTCONS_00060063-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length231

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060063-protein ID=TCONS_00060063-protein|Name=TCONS_00060063-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MAKNSSSLEHRNKFEPNYFYQFRLILIGDSTVGKSSLLRQFTEGQFIQAS
DPTVGVDFHVRIIELNDKVRVKLQLWDTAGQERFRSITRSYYRNCAGCLV
VYDITNRESFDHVKEWLEEARYATEDQDIVYCLIGHKVDLDYRREVSTSE
GEAFANAHGMTFIETSAKILCNVEESFISVAREIYSRLELGQIAQKDGWD
GVKTVPFRPGNVYLSQETLNETNQNDKKCCR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037779XLOC_037779Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060063TCONS_00060063Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 127..140
score: 38.5
coord: 162..184
score: 44.09
coord: 22..43
score: 46.48
coord: 45..61
score: 31.76
coord: 64..86
score: 48.98
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 22..187
e-value: 1.3E-90
score: 317.0
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 19..187
e-value: 4.8E-34
score: 129.1
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 24..187
e-value: 1.9E-9
score: 2.2
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 27..227
e-value: 4.0E-5
score: 23.7
NoneNo IPR availableGENE3D3.40.50.300coord: 87..185
e-value: 8.5E-35
score: 118.3
NoneNo IPR availableGENE3D3.30.70.1390coord: 20..86
e-value: 1.4E-29
score: 101.4
NoneNo IPR availablePROSITEPS51419RABcoord: 15..230
score: 34.061
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 21..177
e-value: 1.1E-29
score: 101.3
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 23..185
e-value: 1.8E-56
score: 190.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 19..205

Blast
[Close]
BLAST of TCONS_00060063-protein vs. Swiss-Prot (Human)
Match: RB39B (Ras-related protein Rab-39B OS=Homo sapiens GN=RAB39B PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 1.237e-79
Identity = 114/216 (52.78%), Postives = 158/216 (73.15%), Query Frame = 0 
Query:   14 FEPNYFYQFRLILIGDSTVGKSSLLRQFTEGQFIQASDPTVGVDFHVRIIELNDKVRVKLQLWDTAGQERFRSITRSYYRNCAGCLVVYDITNRESFDHVKEWLEEARYATEDQDIVYCLIGHKVDLDYRREVSTSEGEAFANAHGMTFIETSAKILCNVEESFISVAREIYSRLELGQIAQKDGWDGVKTVPFRPGNVYLSQETLNETNQNDKKC 229
             E  + YQFRLI+IGDSTVGKS L+R+FTEG+F Q SDPTVGVDF  R++E+    R+KLQ+WDTAGQERFRSITR+YYRN  G L+++DITNR SF +V EWLEE +   +   IV+ L+GHK DLD +R+V+  E E  A A+GM +IETSA+   NVE++F  + R+IY  ++ G+I  ++GW+GVK+  F P  V+ S+E +    +++++C
Sbjct:    1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEITIQEGWEGVKS-GFVPNVVHSSEEVV----KSERRC 211
The following BLAST results are available for this feature:
BLAST of TCONS_00060063-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RB39B1.237e-7952.78Ras-related protein Rab-39B OS=Homo sapiens GN=RAB... [more]
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