TCONS_00061384-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00061384-protein
Unique Name	TCONS_00061384-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	713

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00061384-protein ID=TCONS_00061384-protein|Name=TCONS_00061384-protein|organism=Clytia hemisphaerica|type=polypeptide|length=713bp
MSMSSNSPLGESIHNANEALSLCLSNKFNQAKDFIEPKNGDLMYHAISKG
TISYLQAVLTYEPELIALAYEKVKDASILCDKYRKKYSWGETIQSFVSKQ
SYNDFTEEELHAELCYAECLLEWALLTFIQDENLMSFIKGGLKIKNAYGI
YRNCMTALEEKSKTLQLSHHRSDFESGVYMGIGTFNLLLSLLPTRVLRLL
EWVGFSGDKLQGLQWLDKGYHLDGLRSPMCTVSLLGYHIVASPLLGIGDT
DIPYVQVILDVYLKKFPESSIFLYFSGRLKQTQGLLDEALHEYEKSVSGN
IDWQQVHHICYWEMMWCYSFKADWKKAAEFAEKLSTESKWSKSSYLYMQA
AFLLMQQFENELNEPTAQKDTDFDEKISNILHDVAKHKQRIAGKSLPFEK
FACCRVEKYKATGTLILPAMELIHIWNGFTMFSNHTETLNHFMKLIKAAL
QKLEKRNDTSKHGHDNISLCYLLQGICLRYLKQSHEAEESLARVAKCSAS
QFSSKMDSYFPAWASAEIGFMYKELGEDEKALKQLQHTLKNYSKYGLESR
LHFKVHSGIEVLKDKKRNPRKNHVTPTDQSDEDEEFADISDEPFDGSNGV
GPYGNSDTSESSSLKSASSVNADLSNNKLTDLKNLDLNKPSKKNSIPSKS
SMTSSPRDVTSTSTPSSNDVTPFHTPPSSSPVSEASSSISPKHSYNALGT
PKDSPRLSCETSI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_038516	XLOC_038516	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00061384	TCONS_00061384	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom
IPR019412	OMP_Iml2/TPR_39

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 16..392 e-value: 4.1E-6 score: 25.9
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 429..568 e-value: 4.6E-6 score: 25.8
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 438..545
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 260..359
IPR019412	Outer membrane protein Iml2/Tetratricopeptide repeat protein 39	PFAM	PF10300	DUF3808	coord: 18..481 e-value: 5.5E-121 score: 404.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 564..713

Blast

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BLAST of TCONS_00061384-protein vs. Swiss-Prot (Human)
Match: TT39B (Tetratricopeptide repeat protein 39B OS=Homo sapiens GN=TTC39B PE=1 SV=4)

HSP 1 Score: 410.223 bits (1053), Expect = 7.978e-134
Identity = 215/549 (39.16%), Postives = 334/549 (60.84%), Query Frame = 0

Query:   19 ALSLCLSNKFNQAKDFIEPKNGDLMYHAISKGTISYLQAVLTYEPELIALAYEKVKDASILCDKYRKKYSWGETIQSFVSKQSYNDFTEEELHAELCYAECLLEWALLTFIQDENLMSFIKGGLKIKNAYGIYRNCMTALEEKSKTLQLSHHRSDFESGVYMGIGTFNLLLSLLPTRVLRLLEWVGFSGDKLQGLQWLDKGYHLDGLRSPMCTVSLLGYHIVASPLLGIGDTDIPYVQVILDVYLKKFPESSIFLYFSGRLKQTQGLLDEALHEYEKSVSGNIDWQQVHHICYWEMMWCYSFKADWKKAAEFAEKLSTESKWSKSSYLYMQAAFLLMQQFENELNEPTAQKDTDFDEKISNILHDVAKHKQRIAGKSLPFEKFACCRVEKYKAT----GTLILPAMELIHIWNGFTMFSNHTETLNHFMKLIKAALQKLEKRNDTSKHGHDNISLCYLLQGICLRYLKQSHEAEESLARVAKCSASQFSSKMDSYFPAWASAEIGFMYKELGEDEKALKQLQHTLKNYSKYGLESRLHFKVHSGIEVLK 563
            AL+L LSNKF  A + + P   + MYHA+   TI  LQAVLT+E + I      +KDA   C KYRKKY+  E+  S +S+ S    +EEE+HAE+CYAECLL+ A LTF+QDEN+++FIKGGLKI+ +Y IY+ C++ L E  K         +FE GV +G G FNL+LSLLP R++RLLE++GFSG++  GL  L +G     +RS +C +++L +H   S +LG G+ ++   + +L  +L++FP  S+ L++  R++  +G L+EA   ++K +S   +W+Q HH+CYWE+MW   F+ +W +A  +++ L  ESKWSK++Y++++AA L M   E+ +           +E +  +   V   KQRIAGKS+P EKFA  +  +Y A+      LILPA+E++++WNGF++ S   +   + +  ++ A   L+ +N  S    D+  L  LL+G CL+ L++  +AE     V +   S+   K D Y   +   E+  +YK  GE +KA+K L+    NY  Y LESRLHF++ + + + +
Sbjct:  142 ALNLFLSNKFTDALELLRPWAKESMYHALGYSTIVVLQAVLTFEQQDIQNGISAMKDALQTCQKYRKKYTVVESFSSLLSRGSLEQLSEEEMHAEICYAECLLQKAALTFVQDENMINFIKGGLKIRTSYQIYKECLSILHEIQKNKLQQEFFYEFEGGVKLGSGAFNLMLSLLPARIIRLLEFIGFSGNRELGLLQLREGASGRSMRSALCCLTILAFHTYISLILGTGEVNVAEAERLLAPFLQQFPNGSLVLFYHARIELLKGNLEEAQEVFQKCISVQEEWKQFHHLCYWELMWINVFQQNWMQAYYYSDLLCKESKWSKATYVFLKAAILSMLPEEDVVAT---------NENVVTLFRQVDSLKQRIAGKSIPTEKFAVRKARRYSASLPAPVKLILPALEMMYVWNGFSIVSKRKDLSENLLVTVEKAEAALQSQNFNS-FSVDDECLVKLLKGCCLKNLQRPLQAELCYNHVVE---SEKLLKYDHYLVPFTLFELASLYKSQGEIDKAIKFLETARNNYKDYSLESRLHFRIQAALHLWR 677

The following BLAST results are available for this feature:

BLAST of TCONS_00061384-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00061384-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TT39B	7.978e-134	39.16	Tetratricopeptide repeat protein 39B OS=Homo sapie...	[more]

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TCONS_00061384-protein (polypeptide) - C. hemisphaerica