TCONS_00061798-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061798-protein
Unique NameTCONS_00061798-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061798-protein ID=TCONS_00061798-protein|Name=TCONS_00061798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=366bp
MSGQGQKRGNQGGGSDGGGKKMRADSITLRFLLQSKHAGGIIGKGGQTIK
RLRSEYNATVSVPDTNAPERVLSIAASQESAISVLRECLPLCHEPPYPIT
GNSEGNSGGNNLEVNFLVHSSQVGGVIGRAGSNIKELRETTGTSIKVFQE
CLPNSTERVVAIGAPNEDGIIDVIHRVLAIMQEQPIKGNIALYDPSMEPW
DQGQQGGYGGGQMHGGRGGGRGGMRGGRGGGRGGGRGGFNNQQGGFNNQQ
GGFNGPPQDQGSFGGFGGGQQDFGGDFNQGDGGNYGKGNVETTQVTIPND
LAGAIIGKGGERIRNIRQRSGADIKIQDPLPGKADRVITIAGNTEQIQYG
QFLMQQSVRQFSGKQS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038774XLOC_038774Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061798TCONS_00061798Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR004088KH_dom_type_1
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004087K Homology domainSMARTSM00322kh_6coord: 110..182
e-value: 5.2E-12
score: 55.9
coord: 289..359
e-value: 1.0E-14
score: 64.9
coord: 25..93
e-value: 2.2E-8
score: 43.9
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 26..95
e-value: 2.7E-15
score: 55.2
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 102..255
e-value: 1.5E-17
score: 62.6
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 287..365
e-value: 2.2E-18
score: 65.1
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 115..170
e-value: 1.6E-11
score: 43.7
coord: 28..80
e-value: 5.8E-11
score: 42.0
coord: 292..355
e-value: 1.3E-16
score: 60.0
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 106..187
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 25..95
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 286..360
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..288
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 111..177
score: 14.047
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 26..89
score: 14.299
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 290..354
score: 18.009
NoneNo IPR availableCDDcd02396PCBP_like_KHcoord: 113..178
e-value: 4.46322E-16
score: 70.9683
NoneNo IPR availableCDDcd00105KH-Icoord: 292..355
e-value: 8.65383E-16
score: 70.2815
NoneNo IPR availableCDDcd02396PCBP_like_KHcoord: 28..87
e-value: 7.80794E-15
score: 67.5015

Blast
[Close]
BLAST of TCONS_00061798-protein vs. Swiss-Prot (Human)
Match: HNRPK (Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.463e-44
Identity = 102/250 (40.80%), Postives = 139/250 (55.60%), Query Frame = 0 
Query:   27 ITLRFLLQSKHAGGIIGKGGQTIKRLRSEYNATVSVPDTNAPERVLSIAASQESAISVLRECLPLCHE---PPYPITG-------------NSEGNSGGN-NLEVNFLVHSSQVGGVIGRAGSNIKELRETTGTSIKVFQECLPNSTERVVAIGAPNEDGIIDVIHRVLAIMQEQPIKGNIALYDPSM--EPWDQGQQGGYGGGQMHGGRGGGRGGMRGGRGGGRGGGRGGFNNQQGGFNNQQGGFNGPP 257
            + LR LLQSK+AG +IGKGG+ IK LR++YNA+VSVPD++ PER+LSI+A  E+   +L++ +P   E    P P                N +   G + + E+  L+H S  GG+IG  G+ IKELRE T T+IK+FQEC P+ST+RVV IG    D +++ I  +L ++ E PIKG    YDP+   E +D G     G   M   R       RG   G    GRGGF+    G    +GG   PP
Sbjct:   43 VELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGG-KPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYG-----GFTMMFDDR-------RGRPVGFPMRGRGGFDRMPPG----RGGRPMPP 275

HSP 2 Score: 107.071 bits (266), Expect = 1.364e-25
Identity = 65/140 (46.43%), Postives = 89/140 (63.57%), Query Frame = 0 
Query:  225 RGGRGGGRGGGRGGFNNQQGGFNNQQGGFNGPPQDQGSFGGFGGGQQDFGGDFNQGDGGNYGKGNVETTQVTIPNDLAGAIIGKGGERIRNIRQRSGADIKIQDPLPGKADRVITIAGNTEQIQYGQFLMQQSVRQFSGK 364
            R GR G R  G  GF+  +  +++    ++ P + Q ++   GG   D+     +G  G+ G G + TTQVTIP DLAG+IIGKGG+RI+ IR  SGA IKI +PL G  DR+ITI G  +QIQ  Q+L+Q SV+Q+SGK
Sbjct:  325 RRGRPGDRYDGMVGFSADET-WDSAIDTWS-PSEWQMAYEPQGGSGYDYSYAGGRGSYGDLG-GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGK 461
The following BLAST results are available for this feature:
BLAST of TCONS_00061798-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HNRPK2.463e-4440.80Heterogeneous nuclear ribonucleoprotein K OS=Homo ... [more]
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