TCONS_00062004-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00062004-protein
Unique Name	TCONS_00062004-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	837

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00062004-protein ID=TCONS_00062004-protein|Name=TCONS_00062004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=837bp
MSMWNELRSMRSEESVRKLSEIYKKRNFPTEVRDMFAGWFEEQDWSFQEQ
LPENSMRAQELLSTLIKKIDEHCSKSPADLMSQMRLLETKRTFNDSFGSD
AKLFVATVRDILTDERELLAVKHMEEVNLNSQSGVSTPQQQGQGGPQQQQ
QQPMDSTTSMQQQQQQQQQQQQGMISDVRQSLMELKSNVMSLDAYIKEYR
NRQEDFIIQYQDVCKVEADLNQLGQRPQSVQIQQQMAMMQKRKEDIENML
RTKAEQLLKDRDIIMKTLLNLQQSVQQLSTKIIEDIFSWRAMQQKSLSGA
PKPGSLDDIQEAFENISESLWHFYSLATQYKLLFDMLPITKYGQEKENIE
QLLKEIVRTLTALITRSFIVDKQPPQVLKTQTKFQASVRLLIGSRLNLQM
STEVTVSILSEKQCKELAAGKKLSEIGTCGEILNEKCVMELNKDRSYLQA
EFKNLQLKKIKRQDRKGQESVLEAKSALVFSANLNISGDELPVLCMSVPV
VVVVHGNQGPNSEATIIWDNMFSRPDREPFDVPEEVTWKDMSVALNARWM
MTSDNELHSDHLMYLREKIFSNVADKEMITPETKIPWALFNKEPLKGRSF
TFWEWFHGAIEVVRKNLKEHWKDSTLEFMSRQTAHQKLLEKTPGTFLIRF
SDGELGAVTIAWCNERHGRKEIWYLQPWSSKDFSIRNLADRIFDIPELTY
LYPNIRKEQAFGRFKSNEVATDVDPHGYVSAGIIARILPTQDQAYMNQNP
YSPGAPQQQQWPMASPEFPGSNQQIAFSPQMSGGTEMGGMNPNAELDFAD
SSGVDYNNMISEASNDAHMTNNMEFARYFPVGNNYSQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_038867	XLOC_038867	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00062004	TCONS_00062004	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013799	STAT_TF_prot_interaction
IPR000980	SH2
IPR013801	STAT_TF_DNA-bd
IPR012345	STAT_TF_DNA-bd_sub
IPR013800	STAT_TF_alpha
IPR008967	p53-like_TF_DNA-bd
IPR015988	STAT_TF_coiled-coil

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0007165	signal transduction

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0007165	signal transduction
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 229..256
None	No IPR available	COILS	Coil	Coil	coord: 182..202
None	No IPR available	COILS	Coil	Coil	coord: 438..458
None	No IPR available	GENE3D	1.20.1050.20		coord: 175..368 e-value: 2.0E-31 score: 108.8
None	No IPR available	GENE3D	1.10.238.10		coord: 506..624 e-value: 4.5E-37 score: 126.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..175
None	No IPR available	CDD	cd09919	SH2_STAT_family	coord: 605..716 e-value: 4.50611E-38 score: 137.716
IPR013799	STAT transcription factor, protein interaction	SMART	SM00964	STAT_int_2	coord: 2..125 e-value: 2.3E-11 score: 53.8
IPR013799	STAT transcription factor, protein interaction	PFAM	PF02865	STAT_int	coord: 2..120 e-value: 1.5E-20 score: 73.8
IPR013799	STAT transcription factor, protein interaction	GENE3D	1.10.532.10		coord: 1..123 e-value: 3.1E-20 score: 72.1
IPR013799	STAT transcription factor, protein interaction	SUPERFAMILY	48092	Transcription factor STAT-4 N-domain	coord: 1..122
IPR000980	SH2 domain	GENE3D	3.30.505.10		coord: 625..712 e-value: 2.5E-10 score: 39.8
IPR000980	SH2 domain	PFAM	PF00017	SH2	coord: 628..679 e-value: 7.4E-8 score: 32.3
IPR000980	SH2 domain	PROSITE	PS50001	SH2	coord: 605..702 score: 11.235
IPR000980	SH2 domain	SUPERFAMILY	55550	SH2 domain	coord: 628..733
IPR013801	STAT transcription factor, DNA-binding	PFAM	PF02864	STAT_bind	coord: 368..614 e-value: 4.1E-81 score: 272.4
IPR012345	STAT transcription factor, DNA-binding, subdomain	GENE3D	2.60.40.630		coord: 369..505 e-value: 7.1E-40 score: 136.1
IPR013800	STAT transcription factor, all-alpha domain	PFAM	PF01017	STAT_alpha	coord: 177..365 e-value: 7.8E-23 score: 81.1
IPR008967	p53-like transcription factor, DNA-binding	SUPERFAMILY	49417	p53-like transcription factors	coord: 361..615
IPR015988	STAT transcription factor, coiled coil	SUPERFAMILY	47655	STAT	coord: 176..368

Blast

[Close]

BLAST of TCONS_00062004-protein vs. Swiss-Prot (Human)
Match: STA5B (Signal transducer and activator of transcription 5B OS=Homo sapiens GN=STAT5B PE=1 SV=2)

HSP 1 Score: 399.438 bits (1025), Expect = 6.184e-127
Identity = 259/794 (32.62%), Postives = 432/794 (54.41%), Query Frame = 0

Query:    1 MSMWNELRSMRSEESVRKLSEIYKKRNFPTEVRDMFAGWFEEQDW-SFQEQLPENSMRAQELLSTLIKKIDEHCSKSPAD--LMSQMRLLETKRTFNDSFGSDAKLFVATVRDILTDERELLAVKHMEEVNLNSQSGVSTPQQQGQGGPQQQQQQPMDSTTSMQQQQQQQQQQQQGMISDVRQSLMELKSNVMSLDAYIKEYRNRQEDFIIQYQDVCKVEADLNQLGQRPQSVQIQQQMAMMQKRKEDIENMLRTKAEQLLKDRDIIMKTLLNLQQSVQQLSTKIIED-IFSWRAMQQKSLSGAPKPGSLDDIQEAFENISESLWHFYSLATQYKLLFDMLPITKYGQEKENIEQLLKEIVRTLTALITRSFIVDKQPPQVLKTQTKFQASVRLLIGSRLNLQMS-TEVTVSILSEKQCKELAAGKKLSEIGTCGEILNEKCVMELNKDRSYLQAEFKNLQLKKIKRQDRKGQESVLEAKSALVFSANLNISGDEL--PVLCMSVPVVVVVHGNQGPNSEATIIWDNMFSRPDREPFDVPEEVTWKDMSVALNARWM--MTSDNELHSDHLMYLREKIFSNVADKEMITPETKIPWALFNKEPLKGRSFTFWEWFHGAIEVVRKNLKEHWKD-STLEFMSRQTAHQKLLEKTPGTFLIRFSDGELGAVTIAWCNERHGRKEIWYLQPWSSKDFSIRNLADRIFDIPELTYLYPNIRKEQAFGRFKS---NEVATDVDPHGYVSAGIIARILPTQDQA----------YMNQNPYSPGAPQQQQWPMASPEFPGS 771
            M++W + + ++ E ++ ++  +Y + +FP EVR   + W E Q W S     P+ +++A +LL  L++++ +       +   + +++L        +++       V  +R IL +E+ L     + E N  S                     P  S      Q+  Q          + Q+  EL+      +  +K+ +  QE FIIQYQ+  +++A    L Q     ++ ++ A+ QK+   +E  L+ +A+ L + R  + +      Q +++  T I++D +  W+  QQ + +G P  GSLD +Q   E ++E +W       + + L   LPI   G  +E + ++   I   ++AL+T +FI++KQPPQVLKTQTKF A+VRLL+G +LN+ M+  +V  +I+SE+Q K L   +  +     GEILN  CVME ++    L A F+N+ LK+IKR DR+G ESV E K  ++F +  ++ G+EL   V  +S+PVVV+VHG+Q  N+ AT++WDN F+ P R PF VP++V W  +  ALN ++   + S+  L  ++L++L +K+F+N +          + W+ FN+E L GR++TFW+WF G +EV++K+LK HW D + L F+++Q AH  L+ K  GTFL+RFSD E+G +TIAW  +   R   W L P++++DFSIR+LADR+ D+  L Y++P+  K++ + ++ +    E AT     GYV    I +++P    A          YM+Q P SP    Q  + M  P+ P S
Sbjct:    1 MAVWIQAQQLQGE-ALHQMQALYGQ-HFPIEVRHYLSQWIESQAWDSVDLDNPQENIKATQLLEGLVQELQKKAEHQVGEDGFLLKIKLGHYATQLQNTYDRCPMELVRCIRHILYNEQRL-----VREANNGS--------------------SPAGSLADAMSQKHLQ----------INQTFEELRLVTQDTENELKKLQQTQEYFIIQYQESLRIQAQFGPLAQLSPQERLSRETALQQKQV-SLEAWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAEHLCQQLPIP--GPVEEMLAEVNATITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQVKATIISEQQAKSLLKNEN-TRNDYSGEILNNCCVMEYHQATGTLSAHFRNMSLKRIKRSDRRGAESVTEEKFTILFESQFSVGGNELVFQVKTLSLPVVVIVHGSQDNNATATVLWDNAFAEPGRVPFAVPDKVLWPQLCEALNMKFKAEVQSNRGLTKENLVFLAQKLFNNSSSHLEDYSGLSVSWSQFNRENLPGRNYTFWQWFDGVMEVLKKHLKPHWNDGAILGFVNKQQAHDLLINKPDGTFLLRFSDSEIGGITIAWKFDSQERM-FWNLMPFTTRDFSIRSLADRLGDLNYLIYVFPDRPKDEVYSKYYTPVPCESATAKAVDGYVKPQ-IKQVVPEFVNASADAGGGSATYMDQAP-SPAVCPQAHYNM-YPQNPDS 749

The following BLAST results are available for this feature:

BLAST of TCONS_00062004-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00062004-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
STA5B	6.184e-127	32.62	Signal transducer and activator of transcription 5...	[more]

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TCONS_00062004-protein (polypeptide) - C. hemisphaerica