TCONS_00062559-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062559-protein
Unique NameTCONS_00062559-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062559-protein ID=TCONS_00062559-protein|Name=TCONS_00062559-protein|organism=Clytia hemisphaerica|type=polypeptide|length=477bp
MTSGVANSKAGSWTLNFEYPLPTTVSQCYSFLPKMAEHPKLTPTASSEMM
QATSLADRNQLTNGAINNLKKSSRTRSKSESHHPSSDKQKELYGVVVKSA
KDRAHDRKPKNMKGSGKPKKAGGGGKGTWGKNGEIYEEECNDPQDPNYDS
ETDKPEDLVMQEVIPDLTSAEFDVVVTPLLQEFFEHGITFEVIEPLKELN
ITHLKHRIVYLLVTLALEKKGAQRELASVLLSDLYGERLVCEQDMELGFQ
ALMNTLPDLQLDTPDATTILGQFMARCIADDCLNPIYIREHLEHPNDIQR
QALTTANTYLQSRHGLVRLDTVWGFGGGNRPVKTLIKEIVLMIREYLASK
DMAEAERCLSDLDVPHFHHEIVYEAIQIALENNSDVIIEAIVGLLKHFFT
CGMVSIDQMNSGFKRIFESMDDIVIDVPRAYKYLDVVLDKSCRAGIITLA
MRQSAPSRGRKRFVSEGDFGMSPRPLI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039195XLOC_039195Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062559TCONS_00062559Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003891Initiation_fac_eIF4g_MI
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003891Initiation factor eIF-4 gamma, MA3SMARTSM00544ma3_7coord: 335..448
e-value: 2.6E-26
score: 103.4
coord: 172..284
e-value: 2.6E-27
score: 106.7
IPR003891Initiation factor eIF-4 gamma, MA3PFAMPF02847MA3coord: 337..447
e-value: 1.3E-21
score: 76.5
coord: 176..283
e-value: 2.0E-21
score: 76.0
IPR003891Initiation factor eIF-4 gamma, MA3PROSITEPS51366MIcoord: 171..293
score: 22.795
IPR003891Initiation factor eIF-4 gamma, MA3PROSITEPS51366MIcoord: 334..457
score: 23.138
NoneNo IPR availableGENE3D1.25.40.180coord: 331..467
e-value: 1.2E-33
score: 115.1
coord: 165..312
e-value: 4.5E-37
score: 126.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..153
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 166..327
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 331..457

Blast
[Close]
BLAST of TCONS_00062559-protein vs. Swiss-Prot (Human)
Match: PDCD4 (Programmed cell death protein 4 OS=Homo sapiens GN=PDCD4 PE=1 SV=2)

HSP 1 Score: 289.656 bits (740), Expect = 5.249e-93
Identity = 174/402 (43.28%), Postives = 245/402 (60.95%), Query Frame = 0 
Query:   70 KKSSRTRSKSESHHPSSDKQKELYGVVVKSAKDRAHDRKPKNMKGSGKPKKAGGGGKGTWGKNGEIYEEECNDPQDPNYDSETDKPEDLVMQEVIPDLTSAEFDVVVTPLLQEFFEHGITFEVIEPLKELNITHLKHRIVYLLVTLALEKKGAQRELASVLLSDLYGERLVCEQDMELGFQALMNTLPDLQLDTPDATTILGQFMARCIADDCLNPIYIREHLEHPNDIQ-RQALTTANTYLQSRHGLVRLDTVWGFGGGNRPVKTLIKEIVLMIREYLASKDMAEAERCLSDLDVPHFHHEIVYEAIQIALENNSDVIIEAIVGLLKHFFTCGMVSIDQMNSGFKRIFESMDDIVIDVPRAYKYLDVVLDKSCRAGIITLAMRQSAPSRGRKRFVSEGDFG 470
            K SSR   + +S   S          V  S K R  DR+ ++ KG G PKK G GGKG WG  G++Y+ E  D +DPNYD   D  E+ V + V+  L    F+  +TP++QE+FEHG T EV E L++LN+  +K  +  L V+LALE K + RE+ S LLSDL G  ++   D+E  F  L+  LP+L LDTP A  ++GQF+AR + D  L   YI  +    + +Q R AL  A   L    G  R D+VWG GGG + V  L+KEI ++++EYL S D++EAE CL +L+VPHFHHE+VYEAI + LE+  +   + I+ LLK  +    +++DQM  G++RI+  + DI +DVP +Y  L+  +++  +AGII+  +R   PSRGRKRFVSEGD G
Sbjct:   65 KNSSRDSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEEVDVKDPNYD---DDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGT-VMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSRGRKRFVSEGDGG 462
The following BLAST results are available for this feature:
BLAST of TCONS_00062559-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDCD45.249e-9343.28Programmed cell death protein 4 OS=Homo sapiens GN... [more]
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