TCONS_00062974-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062974-protein
Unique NameTCONS_00062974-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length405

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062974-protein ID=TCONS_00062974-protein|Name=TCONS_00062974-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp
MAEEVRRRVVETTDDEDSKLVFETSEDVKVTRTFDQMKLKEDLIRGIYAY
GFERPSAIQQRAILPVTKGRDVIAQAQSGTGKTATFSISALQQIDTRVRE
TQVLILSPTRELAGQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYG
QHIVSGTPGRVFDMIKRRNLRTRSIKMFILDESDEMLNKGFKEQIYDVYR
FLPPATQVVLVSATLPHEILEMTRKFMTDPIRILVKRDELTLEGIKQFFV
AVEREEWKFETLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVVS
MHGDMPQKERESIMKEFRSGTSRVLISTDVWSRGLDVPQVSLVINYDLPN
NRELYIHRIGRSGRYGRKGVAINFVKADDIRVLRDIEQYYSTQIDEMPMN
VADLI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039443XLOC_039443Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062974TCONS_00062974Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 51..248
e-value: 6.8E-59
score: 211.6
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 63..233
score: 29.164
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 285..366
e-value: 2.5E-36
score: 136.7
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 258..366
e-value: 1.2E-32
score: 112.4
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 244..405
score: 27.344
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 57..219
e-value: 1.2E-40
score: 139.1
NoneNo IPR availableGENE3D3.40.50.300coord: 29..242
e-value: 3.9E-51
score: 172.7
NoneNo IPR availableGENE3D3.40.50.300coord: 243..403
e-value: 7.0E-50
score: 168.2
NoneNo IPR availableCDDcd00079HELICccoord: 245..374
e-value: 1.41937E-44
score: 151.622
NoneNo IPR availableCDDcd00268DEADccoord: 34..234
e-value: 1.77142E-100
score: 299.015
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 32..60
score: 10.201
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 100..388

Blast
[Close]
BLAST of TCONS_00062974-protein vs. Swiss-Prot (Human)
Match: IF4A3 (Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4)

HSP 1 Score: 727.243 bits (1876), Expect = 0.000e+0
Identity = 344/401 (85.79%), Postives = 378/401 (94.26%), Query Frame = 0 
Query:    5 VRRRVVETTDDEDSKLVFETSEDVKVTRTFDQMKLKEDLIRGIYAYGFERPSAIQQRAILPVTKGRDVIAQAQSGTGKTATFSISALQQIDTRVRETQVLILSPTRELAGQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQHIVSGTPGRVFDMIKRRNLRTRSIKMFILDESDEMLNKGFKEQIYDVYRFLPPATQVVLVSATLPHEILEMTRKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFETLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVVSMHGDMPQKERESIMKEFRSGTSRVLISTDVWSRGLDVPQVSLVINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKADDIRVLRDIEQYYSTQIDEMPMNVADLI 405
             R+R+++  +++ +K+ FETSE+V VT TFD M L+EDL+RGIYAYGFE+PSAIQQRAI  + KGRDVIAQ+QSGTGKTATFSIS LQ +D +VRETQ LIL+PTRELA QIQK +LALGDYM+VQCHACIGGTN+GEDIRKLDYGQH+V+GTPGRVFDMI+RR+LRTR+IKM +LDE+DEMLNKGFKEQIYDVYR+LPPATQVVL+SATLPHEILEMT KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKF+TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTV SMHGDMPQKERESIMKEFRSG SRVLISTDVW+RGLDVPQVSL+INYDLPNNRELYIHRIGRSGRYGRKGVAINFVK DDIR+LRDIEQYYSTQIDEMPMNVADLI
Sbjct:   13 ARKRLLK--EEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411
The following BLAST results are available for this feature:
BLAST of TCONS_00062974-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF4A30.000e+085.79Eukaryotic initiation factor 4A-III OS=Homo sapien... [more]
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