TCONS_00063264-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063264-protein
Unique NameTCONS_00063264-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length199

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063264-protein ID=TCONS_00063264-protein|Name=TCONS_00063264-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MPSMIKGRETIIFERTGQAPSPSKDFHQLIVTEGNVIWRTWRVSLRKEQM
GIPPSQNKQSYEDFFYDTVVPNDIKRILGEQVLIYVQCIVHKDWLYRMKD
NILIKIFSGLELSDVMSLSQVCRHFRIVCQSNELWRNIYINHYCSNMNED
IKQLGNKIGWKKTFFTDKLQLQKKASRMRKSSGKIKSSAVPDERVLTVL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039647XLOC_039647Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063264TCONS_00063264Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 98..138
e-value: 2.4E-6
score: 37.1
IPR001810F-box domainPFAMPF12937F-box-likecoord: 100..140
e-value: 1.1E-11
score: 44.4
IPR001810F-box domainPROSITEPS50181FBOXcoord: 92..138
score: 11.299
IPR001810F-box domainSUPERFAMILY81383F-box domaincoord: 91..165
NoneNo IPR availableGENE3D1.20.1280.50coord: 92..191
e-value: 9.6E-17
score: 60.8

Blast
[Close]
BLAST of TCONS_00063264-protein vs. Swiss-Prot (Human)
Match: FBX36 (F-box only protein 36 OS=Homo sapiens GN=FBXO36 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.427e-40
Identity = 64/177 (36.16%), Postives = 104/177 (58.76%), Query Frame = 0 
Query:   12 IFERTGQAPSPSKDFHQLIVTEGNVIWRTWRVSLRKEQMGIPPSQNKQSYEDFFYDTVVPNDIKRILGEQVLIYV--QCIVHKDWLYRMKDNILIKIFSGLELSDVMSLSQVCRHFRIVCQSNELWRNIYINHYCSNMNEDIKQLGNKIGWKKTFFTDKLQLQKKASRMRKSSGKIK 186
            +FE  GQ P PSKD++QL+VT   VI+R W++SLR E     P + K+++EDF  ++ +      I G ++L YV   C    D+L R+ D++L+ I S L+L D+  L Q    F  +C S++LW  I +   C  +  D++ L    GW++ FFT+KLQLQ++  + ++  G ++
Sbjct:    9 LFETVGQGPPPSKDYYQLLVTRSQVIFRWWKISLRSEYRSTKPGEAKETHEDFLENSHLQGQTALIFGARILDYVINLCKGKFDFLERLSDDLLLTIISYLDLEDIARLCQTSHRFAKLCMSDKLWEQI-VQSTCDTITPDVRALAEDTGWRQLFFTNKLQLQRQLRKRKQKYGNLR 184
The following BLAST results are available for this feature:
BLAST of TCONS_00063264-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBX364.427e-4036.16F-box only protein 36 OS=Homo sapiens GN=FBXO36 PE... [more]
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