TCONS_00063762-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063762-protein
Unique NameTCONS_00063762-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length230

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063762-protein ID=TCONS_00063762-protein|Name=TCONS_00063762-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MICGKYMNGMKNTRNLRCVVRTCVRCFKRCRNTNSNWPETTXFEAKQVTA
IPRIRAALSFMKKDMFEVPFIATYRKEYIEPELKRDDLWKVYEWDEKYTQ
FTMRRENMRKMFQEMQKYQFELARNDEEAASKPGFKVIEQEDLDRLDTAA
NLQELMDIYVHFQVYHGNEMVDMKEWKAKNKPAPEKKMKKKTIRIKKPKT
KKAKELEIDPETGEPVEKEEGEEPEQEDDD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039977XLOC_039977Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063762TCONS_00063762Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028088Spt6_HTH_DNA-bd_dom
IPR023319Tex-like_HTH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028088Helix-turn-helix DNA-binding domain of Spt6PFAMPF14641HTH_44coord: 45..117
e-value: 5.1E-20
score: 71.9
IPR023319Tex-like protein, HTH domainGENE3D1.10.10.650coord: 38..164
e-value: 1.4E-25
score: 89.1
NoneNo IPR availableSUPERFAMILY158832Tex N-terminal region-likecoord: 51..162

Blast
[Close]
BLAST of TCONS_00063762-protein vs. Swiss-Prot (Human)
Match: SPT6H (Transcription elongation factor SPT6 OS=Homo sapiens GN=SUPT6H PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 7.976e-35
Identity = 63/151 (41.72%), Postives = 98/151 (64.90%), Query Frame = 0 
Query:   40 TTXFEAKQVTAIPRIRAALSFMKKDMFEVPFIATYRKEYIEPELKRDDLWKVYEWDEKYTQFTMRRENMRKMFQEMQKYQFELARNDEEAASKPGFKVIEQEDLDRLDTAANLQELMDIYVHFQVYHGNEMVDMKEWKAKNKPAPEKKMKK 190
             + F  K  + I +I+ AL FM+   FEVPFIA YRKEY+EPEL  +DLW+V++WDEK+TQ  +R+EN+ ++F++MQ YQ+E    D +     G + ++  D++RL    ++ EL D+Y HF +Y+G ++  M+   AK   A  KK+K+
Sbjct:  345 ASSFSRKGPSTIQKIKEALGFMRNQHFEVPFIAFYRKEYVEPELHINDLWRVWQWDEKWTQLRIRKENLTRLFEKMQAYQYEQISADPDKPLADGIRALDTTDMERLKDVQSMDELKDVYNHFLLYYGRDIPKMQN-AAK---ASRKKLKR 491
The following BLAST results are available for this feature:
BLAST of TCONS_00063762-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPT6H7.976e-3541.72Transcription elongation factor SPT6 OS=Homo sapie... [more]
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