TCONS_00064052-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064052-protein
Unique NameTCONS_00064052-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064052-protein ID=TCONS_00064052-protein|Name=TCONS_00064052-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp
QVLPCDVLTRVSQYVPENVAYIQRIIQNGFGYESNGSVYFDTVKFANSEK
HEYAKLVPEAVGDINALAEGEGDLSQASSGEKKSDRDFALWKKSKPGEPE
WDSPWGKGRPGWHIECSVMASDILGSNIDIHTGGVDLKFPHHDNELAQSE
AHYGCDQWINYFLHAGHLTIEGCKMSKSLKNFITIKDALKKNSARQIRFA
FLLHSWNSTLDYSTNVLKEAEQAEKLFGDFFLTVKDILRKPENMKIDAHN
YREAEKTLQTNFLEKKRQVHNALCDSIDTVNALHQMQALVKLANIYIGQC
KQNEQTPNHSVLRGIAKYLTRMLKVFGANEGDQEIGFSAGGSAAANKEEM
VMPFINVMAEFREDVRKIAREEKVTGILRLCDDVRDDKLVEIGVKLEDQE
GGLAPIVKLVDRETLLKEKQQKLEEIEKKKKEKEEAKKKQLAEQKAKEEK
AKTPPSELFIKETDKYSQFDENGVPTHDAAGEKLSASQIKKLKKQYTQQE
KLYKKYVGSN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040160XLOC_040160Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064052TCONS_00064052Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024909Cys-tRNA/MSH_ligase
IPR032678tRNA-synt_1_cat_dom
IPR014729Rossmann-like_a/b/a_fold
IPR009080tRNAsynth_Ia_anticodon-bd
Vocabulary: Biological Process
TermDefinition
GO:0006418tRNA aminoacylation for protein translation
Vocabulary: Molecular Function
TermDefinition
GO:0004812aminoacyl-tRNA ligase activity
GO:0000166nucleotide binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006418 tRNA aminoacylation for protein translation
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 409..452
NoneNo IPR availableGENE3D1.20.120.640coord: 215..327
e-value: 4.2E-9
score: 36.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 429..457
NoneNo IPR availableSUPERFAMILY52374Nucleotidylyl transferasecoord: 7..220
IPR024909Cysteinyl-tRNA synthetase/mycothiol ligasePRINTSPR00983TRNASYNTHCYScoord: 129..150
score: 71.69
coord: 98..116
score: 79.43
IPR032678tRNA synthetases class I, catalytic domainPFAMPF01406tRNA-synt_1ecoord: 2..221
e-value: 6.5E-87
score: 291.6
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3D3.40.50.620coord: 2..213
e-value: 1.2E-62
score: 211.3
IPR009080Aminoacyl-tRNA synthetase, class Ia, anticodon-bindingSUPERFAMILY47323Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasescoord: 260..403

Blast
[Close]
BLAST of TCONS_00064052-protein vs. Swiss-Prot (Human)
Match: SYCC (Cysteine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=CARS PE=1 SV=3)

HSP 1 Score: 606.675 bits (1563), Expect = 0.000e+0
Identity = 305/509 (59.92%), Postives = 380/509 (74.66%), Query Frame = 0 
Query:    2 VLPCDVLTRVSQYVPENVAYIQRIIQNGFGYESNGSVYFDTVKFANSEKHEYAKLVPEAVGDINALAEGEGDLSQASS--GEKKSDRDFALWKKSKPGEPEWDSPWGKGRPGWHIECSVMASDILGSNIDIHTGGVDLKFPHHDNELAQSEAHYGCDQWINYFLHAGHLTIEGCKMSKSLKNFITIKDALKKNSARQIRFAFLLHSWNSTLDYSTNVLKEAEQAEKLFGDFFLTVKDILRKPENMKIDAHNYREAEKTLQTNFLEKKRQVHNALCDSIDTVNALHQMQALVKLANIYIGQCKQNEQTPNHSVLRGIAKYLTRMLKVFGANEGDQEIGFSAGGSAAA-NKEEMVMPFINVMAEFREDVRKIAREEKVTGILRLCDDVRDDKLVEIGVKLEDQEGGLAPIVKLVDRETLLKEKQQKLEEIEKKKKEKEEAKKKQLAEQKAKEEKAKTPPSELFIKETDKYSQFDENGVPTHDAAGEKLSASQIKKLKKQYTQQEKLYKKYV 507
            VLP DVLTRVS+YVPE V ++Q+I+ NG+GY SNGSVYFDT KFA+SEKH Y KLVPEAVGD  AL EGEGDLS ++    EK+S  DFALWK SKPGEP W  PWGKGRPGWHIECS MA  +LG+++DIH GG DL+FPHHDNELAQSEA++  D W+ YFLH GHLTI GCKMSKSLKNFITIKDALKK+SARQ+R AFL+HSW  TLDYS+N ++ A Q EK   +FFL VKDILR P ++      + E E  L  NF +KK  +H ALCD++DT   + +M+ALV   N+Y+   K   + PN ++L  IA YLT MLK+FGA E D  +GF  GG   + + E  VMP++ V++EFRE VRKIARE+KV  IL+L D +RD+ L E+GV+ ED E GL  +VKLVDR TLLKE+++K    E+K+K+KEEA +++  ++ AK  K K PPSE+F+ ETDKYS+FDENG+PTHD  G++LS  Q KKLKK +  QEKLYK+Y+
Sbjct:  232 VLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTIAGCKMSKSLKNFITIKDALKKHSARQLRLAFLMHSWKDTLDYSSNTMESALQYEKFLNEFFLNVKDILRAPVDITGQFEKWGEEEAELNKNFYDKKTAIHKALCDNVDTRTVMEEMRALVSQCNLYMAARKAVRKRPNQALLENIALYLTHMLKIFGAVEEDSSLGFPVGGPGTSLSLEATVMPYLQVLSEFREGVRKIAREQKVPEILQLSDALRDNILPELGVRFEDHE-GLPTVVKLVDRNTLLKEREEKRRVEEEKRKKKEEAARRKQEQEAAKLAKMKIPPSEMFLSETDKYSKFDENGLPTHDMEGKELSKGQAKKLKKLFEAQEKLYKEYL 739
The following BLAST results are available for this feature:
BLAST of TCONS_00064052-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYCC0.000e+059.92Cysteine--tRNA ligase, cytoplasmic OS=Homo sapiens... [more]
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