TCONS_00065102-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00065102-protein
Unique Name	TCONS_00065102-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1053

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00065102-protein ID=TCONS_00065102-protein|Name=TCONS_00065102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1053bp
MQTTHHGICVTKRWKIXQACKRPIMASASPRDGKFSRTSENNGKVGVQMS
TIISTIGRIFHAKFQQTTIDDFVYIEEIAQQIYEENSRNVKADLNVQNII
QQIIMYQIFNTANLSKTSNNSDPVIPIPPTSAVTWNQDSMDPSRALSETD
ITDKVHDLSNLPLQKAPIDLSIEERRIAVLRFLLQCFTRVLDERSSNPNR
LSDDKWKDSLTNAKTLIIQYALILITGKLTNKRMENPSNIMYQLMLTDQE
LISRTFLTEFVNTISKKTFNQIFTPVLHSLMKDMRSGSLAFEKDRIPLMV
LAELCEVKSRDSERPFCTLMTSLPSFLPEPISDAGGREIQKLSFLGSFLQ
FSVFASDDPEVPKKYFPEERSWNHATETIRDNLRMALQIVRTEMFKIVHS
LLITTSLRDDCLRFLAAVLTRNAKKSQIQADEKLLATDGFMINVLTILQN
LFRKVKLEKIDRTYVVNPQSRLNMSQFSTIKSSKEEMAQWKDSLDEKKEL
SELSFSTECFYFTYFCHHISVIPAMRKYIQRMRAIRDMNKLITEIESHES
EWKHTSLSARNTMLLKKWKAQLKQLVEQDVCAVAGLIDEELMRRCLRFYS
SSARWLVDILTQGRGQNAEFPLPEDVPVVFGALPDFFIEDIVEFLLFIDI
HLPQILDDLAMDDFVPLIVILLCNYNYIANPYLVAKLVELLFAMDPALQP
RARNLYEKFANNTIAENHLMKALIKFYVDVESTGSSNEFYDKFGIRYHIS
IILKGLWKRPIHRQAFILETNGDHFTRFINMLINDTTFLLDESVDTLKNI
RDTQELMANTTEWEKLPREGRTSRQRQLATDERQCKSYLTLASETVDMLH
YLTLEIKEPFLQEKLAERLSVMLNYNVKQFTGEKYRDLKVKKPEKYGFQP
KILLDKITDIYIHLDSKPFANAVASDERSYRKELFDDCISLLQRTGLKSD
MKLYQLRAFTDMVEEIYIENSKMALDLDDAPDEYRDPLMDTVMLDPVLLP
SGTIMDRSVIDRHLLNSNTDPFSRQKLTEDMLKPVPDLKAKILEWVDSKK
NKN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040821	XLOC_040821	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00065102	TCONS_00065102	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003613	Ubox_domain
IPR013083	Znf_RING/FYVE/PHD
IPR019474	Ub_conjug_fac_E4_core

Vocabulary: **Biological Process**
Term	Definition
GO:0016567	protein ubiquitination
GO:0006511	ubiquitin-dependent protein catabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0004842	ubiquitin-protein transferase activity
GO:0034450	ubiquitin-ubiquitin ligase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0000151	ubiquitin ligase complex

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0000151	ubiquitin ligase complex
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0034450	ubiquitin-ubiquitin ligase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 531..551
None	No IPR available	COILS	Coil	Coil	coord: 480..500
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 968..1050
IPR003613	U box domain	SMART	SM00504	Ubox_2	coord: 983..1045 e-value: 1.2E-23 score: 94.6
IPR003613	U box domain	PFAM	PF04564	U-box	coord: 980..1051 e-value: 2.6E-26 score: 91.5
IPR003613	U box domain	PROSITE	PS51698	U_BOX	coord: 979..1052 score: 29.573
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 979..1053 e-value: 1.0E-5 score: 24.8
IPR019474	Ubiquitin conjugation factor E4, core	PFAM	PF10408	Ufd2P_core	coord: 345..963 e-value: 3.1E-179 score: 597.5

Blast

[Close]

BLAST of TCONS_00065102-protein vs. Swiss-Prot (Human)
Match: UBE4B (Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1)

HSP 1 Score: 805.823 bits (2080), Expect = 0.000e+0
Identity = 404/881 (45.86%), Postives = 586/881 (66.52%), Query Frame = 0

Query:  179 VLRFLLQCFTRVLDERSSNPNRLSDDKWKDSLTNAKTLIIQYALILITGKLTNKR-MENPSNIMYQLMLTDQELISRTFLTEFVNTISK--KTFNQIFTPVLHSLMKDMRSGSLAFEKDRIPLMVLAELCEVKSRDSERPFCTLMTSLPSFLPEPISDAGGREIQKLSFLGSFLQFSVFASDDPEVPKKYFPEERSWNHATETIRDNLRMALQIVRTEMFKIVHSLLITTSLRDDCLRFLAAVLTRNAKKSQIQADEKLLATDGFMINVLTILQNLFRKVKLEKIDRTYVVNPQSRLNMSQFST-IKSSKEEMAQWKDSL-DEKKELSELSFSTECFYFTYFCHHISVIPAMRKYIQRMRAIRDMNKLITEIESHESEWKHTSLSARNTMLLKKWKAQLKQLVEQDVCAVAGLIDEELMRRCLRFYSSSARWLVDILTQGRGQNAEFPLPEDVPVVFGALPDFFIEDIVEFLLFIDIHLPQILDDLAMDDFVPLIVILLCNYNYIANPYLVAKLVELLFAMDPALQPRARNLYEKFANNTIAENHLMKALIKFYVDVESTGSSNEFYDKFGIRYHISIILKGLWKRPIHRQAFILETN-GDHFTRFINMLINDTTFLLDESVDTLKNIRDTQELMANTTEWEKLPREGRTSRQRQLATDERQCKSYLTLASETVDMLHYLTLEIKEPFLQEKLAERLSVMLNYNVKQFTGEKYRDLKVKKPEKYGFQPKILLDKITDIYIHLDSKPFANAVASDERSYRKELFDDCISLLQRTGLKSDMKLYQLRAFTDMVEEIYIENSKMALDLDDAPDEYRDPLMDTVMLDPVLLPSGTIMDRSVIDRHLLNSNTDPFSRQKLTEDMLKPVPDLKAKILEWVDSKKNKN 1053
            +L +L++CF RV  E    P   S       L+N ++  I +  +++ G LT  R ++ PS ++  ++  +   +   F+ E V T  +  + F QIF P+L  L    +  SL  +  + PLM L ELCE K   +  P C L+ SL  +LP+ +S   GRE+Q+LS+LG+F  FSVFA DD +V +KYF         T  +  +L+  L++ R E+FKI+HS+L+    R+  L ++AAV+  N KK+Q+Q D++L++TDGFM+N L +LQ L  K+KLE +D TY+ +P+ R+ +    T + ++ E++  W   L  ++   SE  F TECF+ T   HH+S++P+ R+YI+R+RAIR++N+ + +++++ES+WK + L+ R+  +LK+ K QLK+LV    CA AGL+DE  +RRCL FY    + L+ IL      +   PL  DVP VF ALP+F++ED+ EFL FI  + PQ L +    D V  +V++LCN NYI NPYLVAKLVE++F  +PA+QPR +  +E   N+ ++   L+ +L+KFY DVE TG+++EFYDKF IRYHIS I K LW+   H   F+ E N G  F R+INMLINDTTFLLDES+++LK I + QE M N  +W++LPR+ + +RQ QLA DER  +SYL LA+ETVDM H LT ++++PFL+ +L  RL+ MLN+N++Q  G K RDLKV+ PEKYGF+PK LLD++TDIY+ LD   FA A+A D+RSY KELF++ IS +++ G+KS + + + +   + VEEI  +N++  +D  DAPDE+RDPLMDT+M DPV LPSGTIMDRS+I RHLLNS TDPF+RQ LTE ML+PVP+LK +I  W+  K+N +
Sbjct:  426 MLNYLIECFDRVGIEEKKAPKMCSQPAVSQLLSNIRSQCISHTALVLQGSLTQPRSLQQPSFLVPYMLCRN---LPYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSLDSDYFKYPLMALGELCETKFGKT-HPVCNLVASLRLWLPKSLSPGCGRELQRLSYLGAFFSFSVFAEDDVKVVEKYFSGPAITLENTRVVSQSLQHYLELGRQELFKILHSILLNGETREAALSYMAAVVNANMKKAQMQTDDRLVSTDGFMLNFLWVLQQLSTKIKLETVDPTYIFHPRCRITLPNDETRVNATMEDVNDWLTELYGDQPPFSEPKFPTECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRTVEDLKNNESQWKDSPLATRHREMLKRCKTQLKKLVRCKACADAGLLDESFLRRCLNFYGLLIQLLLRILDPAY-PDITLPLNSDVPKVFAALPEFYVEDVAEFLFFIVQYSPQALYEPCTQDIVMFLVVMLCNQNYIRNPYLVAKLVEVMFMTNPAVQPRTQKFFEMIENHPLSTKLLVPSLMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQFVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYLALATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQNSD 1301

The following BLAST results are available for this feature:

BLAST of TCONS_00065102-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00065102-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
UBE4B	0.000e+0	45.86	Ubiquitin conjugation factor E4 B OS=Homo sapiens ...	[more]

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TCONS_00065102-protein (polypeptide) - C. hemisphaerica