TCONS_00065952-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065952-protein
Unique NameTCONS_00065952-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length380

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065952-protein ID=TCONS_00065952-protein|Name=TCONS_00065952-protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp
MPQKSISSFFTKKKPEPKNKEDEKKKQTITDGDSPIKSNRKNNKKRILDE
SSDEETPPVQNKENGLNNNNNETKDSIQPKDSGNQDPPPKRKTARKSVVG
PTKRKLNNEEKQNEPDSKVLKTEAKTESSNVEMEGSSTAEQNKNKEIKEE
ALSPEKEEDNQEKTQENVEGSKSSVIKETANTTEDVKMETDSESKPSGED
QNTTKDIIKAKNENKNENKDSKTEKQKPAESGFFASKKTNKVKKETEEKE
KQLTKTEKADKKPKGMAFFTKTSKDESKPSTASVKPVDYNPAQDKYHPIK
HACWGKDEPTPYMALSKTFQHIEEISARLKIQSILSNFFRSVIVLSPNDL
LMCVYLCLNKLAPAYEGMELGIGENVLMKA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041317XLOC_041317Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065952TCONS_00065952Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012308DNA_ligase_ATP-dep_N
Vocabulary: Molecular Function
TermDefinition
GO:0003910DNA ligase (ATP) activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0006281DNA repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
molecular_function GO:0003677 DNA binding
molecular_function GO:0003910 DNA ligase (ATP) activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 207..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..289
IPR012308DNA ligase, ATP-dependent, N-terminalPFAMPF04675DNA_ligase_A_Ncoord: 311..380
e-value: 4.2E-12
score: 46.6
IPR012308DNA ligase, ATP-dependent, N-terminalGENE3D1.10.3260.10coord: 285..380
e-value: 9.7E-27
score: 93.6
IPR012308DNA ligase, ATP-dependent, N-terminalSUPERFAMILY117018ATP-dependent DNA ligase DNA-binding domaincoord: 288..380

Blast
[Close]
BLAST of TCONS_00065952-protein vs. Swiss-Prot (Human)
Match: DNLI1 (DNA ligase 1 OS=Homo sapiens GN=LIG1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.255e-32
Identity = 124/414 (29.95%), Postives = 191/414 (46.14%), Query Frame = 0 
Query:    3 QKSISSFFTKKKPEPKNKEDEKKKQ-------------------TITDGDSPIKSNRKNNKK-RILD---ESSDEETPPVQNKENGLNNN------------NNETKDSIQPKDSGNQDPPPKRKTARKSVVGPTKRKLNNEEKQNEPDSKVLKTEAKTESSNVEMEGSSTAEQNKNKEIKEEALSPEKEEDNQEKTQENVEGSKSSVIKETANTTEDVKMETDSESKPSGEDQNTTKDIIKAKNENKNENKDSKTEKQKP-AESGFFASKKTNKVKKETEEKEKQLTKTEKADKKPKGMAFFTKTSKDESKPSTASVKPVDYNPAQDKYHPIKHACWGKDEPTPYMALSKTFQHIEEISARLKIQSILSNFFRSVIVLSPNDLLMCVYLCLNKLAPAYEGMELGIGENVLMKA 380
            Q+SI SFF  KK E K K+ EK+                      +++ DSP+K  R   K  R+L    E  DE   P + ++  L+ +            NN +     P DS     P KR+TARK +    KR +           +VL+ +++ E    + +     E+   + + E  ++ EKE ++ ++     +  K+S            K ET +ES    E        +  K E + E + +K  ++ P   S FF  +K   VKKE +E+E      E A + P                    + P  YNPA++ YHP++ ACW   +  PY+A+++TF+ IEE+SARL++   LSN  RSV+ LSP DLL  +YL LN L P  +G+ELG+G+ VL+KA
Sbjct:    2 QRSIMSFFHPKK-EGKAKKPEKEASNSSRETEPPPKAALKEWNGVVSESDSPVK--RPGRKAARVLGSEGEEEDEALSPAKGQKPALDCSQVSPPRPATSPENNASLSDTSPMDSSPSGIP-KRRTARKQL---PKRTIQ----------EVLEEQSEDEDREAKRKKEEEEEETPKESLTEAEVATEKEGEDGDQPTTPPKPLKTS------------KAETPTESVSEPE--------VATKQELQEEEEQTKPPRRAPKTLSSFFTPRKP-AVKKEVKEEEPGAPGKEGAAEGP--------------------LDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKA 357
The following BLAST results are available for this feature:
BLAST of TCONS_00065952-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNLI12.255e-3229.95DNA ligase 1 OS=Homo sapiens GN=LIG1 PE=1 SV=1[more]
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