TCONS_00068361-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068361-protein
Unique NameTCONS_00068361-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1097

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068361-protein ID=TCONS_00068361-protein|Name=TCONS_00068361-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1097bp
MMISELKNLKPIKEEVPGTDTQKPGKLLRCPQEGCGKVFRSSPGYRYHLK
SHDIDPRPHVCHVCHKKFKSANGLKYHLRKAHHIEPVASKQNNNNNNGNA
NSPKDRESLSSEEDHLFNMNEYNSRGYVNGGGGSFSSDRTSSIAPSPLTK
SLSSPLIKNIPLSPLLKSPLDFTQYLSTSSSGSGSQSPYPVKDRYGNFFD
RRNDFTRKYGTDDFTQRGSLSEYTQQCHQNNMEFRNQCQRLSTGDLSNPR
LPSVDFQSQRSFDYFDRRPDGGFHSPHPGHHGVYNNFNNHKNPADELQYT
SLNDVKPSTLHGGGRLFSPFKDLVPPNEAKEYPNSLINSHPHNMPCVSTN
NNNSCSYQDNPYSNSLNLPTVAKSQCHLSQNTEQIVPDISSPGCQLSPPA
YDRNNNNHITNVKRGTSESSIDSDSVFQNENSVISPVPTSTLSPVLPSPD
IIKKLRMDSITDTKEPYFPVSSMESILQSPKSLLTRRTSRSKSIPPALVI
NPNPSSMEIDSKGKDVGVKKDQASKLRQLAEFATSPRSLYNHSPLTSLTP
SLLGTDGSGVEWGLKSPSKFSFSDKSFLLTPTVHRQSVGSESHPTSGSDS
IITSTHPVSPYNIHNIQTPSYWQPQIWPTPVWLCFLKGCHVKFEQDDLNF
RTSEEVADYCTTPGGRKRDNMNFYTSGMKIVCIKMEQSMNSAREMVVLTF
EQIIPGTQRLVAKCPSDHPFYVKHKGWVASSPTEAMARYGTSFRALAVAD
TVIPSPSSNNKLIATPSNTLSPLVKSSVAEVFTFNTNETKMFTQATKIVK
TEPPSSSSTAAFMAPKLPPPPPPTTLNLSSIVTQPKPPHSTASSTSSPSS
SSTVETITLTFSSKASEQDSNSSTAKLVNEYKNLMTKDKTNRDPEFNKSL
SDSESSPSVSVETNALGGGGIRKKRRKPLTGEEKDRRPMNGFMLFAKSMR
VELTKEFPGKDNRAISKLLGERWRESSEEKREEFARSAKEMADERMKVNP
DCWKRKHKKDPKDGAQMSVVSPLGAQKMEQNNNTMLTNNNDVEFDVPSQI
KKIKLEEPDEMVYSPMEDENSMTPTNSPPPSRSITPKEEEQEIPLQT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042665XLOC_042665Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068361TCONS_00068361Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR003652Ataxin_AXH_dom
IPR009071HMG_box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 974..994
NoneNo IPR availableGENE3D3.30.160.60coord: 69..110
e-value: 1.9E-5
score: 24.0
NoneNo IPR availableGENE3D3.30.160.60coord: 25..68
e-value: 5.6E-8
score: 32.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 799..853
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..150
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 884..937
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1055..1097
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 986..1017
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 28..52
e-value: 2.2E-4
score: 30.6
coord: 59..82
e-value: 0.021
score: 24.0
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 30..52
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 61..83
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 28..52
score: 9.099
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 59..87
score: 9.64
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 29..79
IPR003652Ataxin, AXH domainSMARTSM00536toby4coord: 630..759
e-value: 0.008
score: -12.2
IPR003652Ataxin, AXH domainPFAMPF08517AXHcoord: 635..754
e-value: 4.8E-12
score: 46.3
IPR003652Ataxin, AXH domainPROSITEPS51148AXHcoord: 623..763
score: 14.572
IPR003652Ataxin, AXH domainSUPERFAMILY102031AXH domaincoord: 624..754
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 934..1004
e-value: 1.0E-13
score: 61.6
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 937..998
e-value: 9.2E-15
score: 54.7
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 930..1040
e-value: 1.3E-15
score: 57.1
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 935..1004
score: 14.172
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 922..999

Blast
[Close]
BLAST of TCONS_00068361-protein vs. Swiss-Prot (Human)
Match: HBP1 (HMG box-containing protein 1 OS=Homo sapiens GN=HBP1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.166e-22
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 0 
Query:  934 KDRRPMNGFMLFAKSMRVELTKEFPGKDNRAISKLLGERWRESSEEKREEFARSAKEMADERMKVNPDCWKRK 1006
            K +RPMN FMLFAK  RVE T+ +PGKDNRAIS +LG+RW++   E+R  +   AK +A+E+ ++NPDCWKRK
Sbjct:  433 KCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCWKRK 505
The following BLAST results are available for this feature:
BLAST of TCONS_00068361-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HBP17.166e-2257.53HMG box-containing protein 1 OS=Homo sapiens GN=HB... [more]
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