TCONS_00068550-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068550-protein
Unique NameTCONS_00068550-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length256

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068550-protein ID=TCONS_00068550-protein|Name=TCONS_00068550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
MASRRYTPYNFTEDPAQEKAVTKNLTHIEKQNAGTFGKFKFNAKKKSKEE
KRAYEEKRMRTPDKRFGGLTEEDVKKLVLPDHLATNLDILFIGINPGLMS
AYKGHHYCGANNHFWPLLYDSGLIGEPLTYAEDRKCLDYGIGLTNIVART
TRSAAELSREEIKAGVDSCMNMINDLKPLVVCFNGKGIYEIFSDQKKCNI
GRQQNIGNTAVYVMPSTSGLVAQYPRKQDKLVFFEQLKALRDEQKTNGKG
ESSALL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042750XLOC_042750Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068550TCONS_00068550Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005122Uracil-DNA_glycosylase-like
IPR015637MUG/TDG
Vocabulary: Molecular Function
TermDefinition
GO:0019104DNA N-glycosylase activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
molecular_function GO:0019104 DNA N-glycosylase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005122Uracil-DNA glycosylase-likeGENE3D3.40.470.10coord: 81..256
e-value: 1.4E-53
score: 181.0
IPR005122Uracil-DNA glycosylase-likePFAMPF03167UDGcoord: 81..237
e-value: 2.1E-20
score: 73.2
IPR005122Uracil-DNA glycosylase-likeSUPERFAMILY52141Uracil-DNA glycosylase-likecoord: 79..240
IPR015637G/U mismatch-specific DNA glycosylaseCDDcd10028UDG_F2_MUGcoord: 79..239
e-value: 4.64847E-72
score: 219.315

Blast
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BLAST of TCONS_00068550-protein vs. Swiss-Prot (Human)
Match: TDG (G/T mismatch-specific thymine DNA glycosylase OS=Homo sapiens GN=TDG PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 8.063e-46
Identity = 86/191 (45.03%), Postives = 113/191 (59.16%), Query Frame = 0 
Query:   65 RFGGLTEEDVKKLVLPDHLATNLDILFIGINPGLMSAYKGHHYCGANNHFWPLLYDSGLIGEPLTYAEDRKCL-DYGIGLTNIVARTTRSAAELSREEIKAGVDSCMNMINDLKPLVVCFNGKGIYEIFSDQ------KKCNIGRQQNI---GNTAVYVMPSTSGLVAQYPRKQDKLVFFEQLKALRDEQK 245
            RF G++E ++    LPD L  NLDI+ IGINPGLM+AYKGHHY G  NHFW  L+ SGL    L + +D      YGIG TN+V RTT  + +LS +E + G    +  +   +P +  FNGK IYEIFS +      K    G Q +      T  YVMPS+S   AQ+PR QDK+ ++ +LK LRD+ K
Sbjct:  110 RFNGVSEAELLTKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHTLPGKYGIGFTNMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLK 300
The following BLAST results are available for this feature:
BLAST of TCONS_00068550-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TDG8.063e-4645.03G/T mismatch-specific thymine DNA glycosylase OS=H... [more]
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