TCONS_00068621-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00068621-protein
Unique Name	TCONS_00068621-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	701

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00068621-protein ID=TCONS_00068621-protein|Name=TCONS_00068621-protein|organism=Clytia hemisphaerica|type=polypeptide|length=701bp
MSLHLVSFILAILSASKAGQIENKIYDNLKYFQQCILLTNATHQVGCTSD
MNGNRGTLHFIDSDEDLQWLIKKGSHTPYIPLLNASMFTRPVMDKLMESK
KISGVLMIHEPKTQNPTEFSPEDTCPLDNFGIYSGHKEYGDCQKVKWNPV
GNGMSFVYYGIPIFSLTSRHEIDALIKCFRKHNDPKSNKTIDYPLCAVEM
KDFMFAAKDTPTCMRKTEAPNLIGSTYCDPLEDKNVHGFLEPLSPEVDDG
EVIMATTKMDSTAFFHDIALGADNGVTGIVTLLGAAFALGNYKRELSEKN
MAEKLHPVLFSFFNGEAFDYIGSSKMVFDMQRNNFPYKTDYKDPILNITN
DDAYISKFNLSKVGYFLEVGQVGQGNDIFLHTDPISQQIPDIKSKTQDLL
KLIKTQSQNVSLNMETVESGRPLPPASFQRFLRAQNISGVVFTDHKNEFT
NKYYNSRFDNTRNLDIYLNTNTETNETVKLHGPLIDRLNKLSIALANTLY
RLASDGREPSRNITLDKSRTGNLLYCFLYSANCPAFKEILNDKETKPFSN
TPISRYISVGQIKNTITTVLTRLISYYTGDWTKGKCQSKRSELPYMYSYS
TVKGEFVDDTYTCVKSVSFTTPAVSPSFELKDYASTEYSTWTESMWSGDV
GVRLYMVANPTNEIIVLVVGIVMLLSSIAFVYFIKKNAHILFTPSIVVIN
Q

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042803	XLOC_042803	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00068621	TCONS_00068621	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008710	Nicastrin

Vocabulary: **Biological Process**
Term	Definition
GO:0016485	protein processing

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016485	protein processing
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008710	Nicastrin	PFAM	PF05450	Nicastrin	coord: 252..500 e-value: 5.6E-52 score: 176.4
None	No IPR available	GENE3D	3.40.630.10		coord: 138..509 e-value: 5.2E-12 score: 45.2
None	No IPR available	CDD	cd03881	M28_Nicastrin	coord: 158..478 e-value: 1.74035E-94 score: 296.627
None	No IPR available	SUPERFAMILY	53187	Zn-dependent exopeptidases	coord: 227..383 coord: 419..468

Blast

[Close]

BLAST of TCONS_00068621-protein vs. Swiss-Prot (Human)
Match: NICA (Nicastrin OS=Homo sapiens GN=NCSTN PE=1 SV=2)

HSP 1 Score: 418.698 bits (1075), Expect = 6.379e-137
Identity = 248/716 (34.64%), Postives = 377/716 (52.65%), Query Frame = 0

Query:    3 LHLVSFILAILSASKAGQIENKIYDNLKYFQQCILLTNATHQVGCTSDMNGNRGTLHFIDSDEDLQWLIKKGSHTPYIPLLNASMFTRPVMDKLM-ESKKISGVLMIHEPKTQNPTEFSPEDTCPLDNFGIYSGH--KEYGDCQKVKWNPVGNGMSFVYYGIPIFSLTSRHEIDALIKCFRKHNDPKSNKTIDYPLCAVEMKDFMFAAKDTPTCMRKTEAPNLIGSTY-------CDPLEDKNVHGFLEPLSPE---VDDGEVIMATTKMDSTAFFHDIALGADNGVTGIVTLLGAAFALGNYKRELSEKNMAEKLHPVLFSFFNGEAFDYIGSSKMVFDMQRNNFPYKTDYKDPILNITNDDAYISKFNLSKVGYFLEVGQVGQGN--DIFLHTDPISQQIPDIKSKTQDLLKLIKTQSQNV-SLNMETVESGRPLPPASFQRFLRAQNISGVVFTDHKNEFTNKYYNSRFDNTRNLDIYLNTNTETNETVKLHGPLIDRLNKLSIALANTLYRLASDGREPSRNITLDKSRTGNLLYCFLYSANCPAFKEILNDKETKPFSNTPISRYISVGQIKNTITTVLTRLISYYTG---DWTKGKCQSKR---SELPYMYSYSTVKGEF----VDDTYTCVKSVSFTTPAVSPSFELKDYASTEYSTWTESMWSGDVGVRLYMVANPTNEIIVLVVGIVMLLSSIAFVYFIKKNAHILF 692
            L L+SF + +    +   +E KIY  L     C+ L NATHQ+GC S ++G+ G +H ++ +EDLQW++  G + PY+ LL +  FTR +M+KL   + +I+G L +   K    + FSP   CP D FG+YS     E+  C++++WN +GNG+++  +  PIF L   +E   + +C++ HN  ++     +PLCA+++   M A   T TCMR++     I ST+       CDPL D NV   L+P++       D  V++A T++DS +FF ++A GA++ V   VT L AA AL          ++      V+F FF GE FDYIGSS+MV+DM++  FP +                     L  V  F+E+GQV      ++++HTDP+SQ+   ++++ +DLL  ++     V ++ +      +PLPP+S QRFLRA+NISGVV  DH   F NKYY S +D   N+++         E +         L  ++  L   LY LA  G   S  +  D      LLY FL  AN   F+ IL         + P+  YI+V    NT T V+   ++  TG   + T+ +CQ      SE   +Y YS V+G       D    CV+S +    A+SP+FEL  ++STEYSTWTES W  D+  R++++A+   E+I L VG  +L+ S+   Y I   A +LF
Sbjct:   18 LRLLSFCVLLAGLCRGNSVERKIYIPLNKTAPCVRLLNATHQIGCQSSISGDTGVIHVVEKEEDLQWVLTDGPNPPYMVLLESKHFTRDLMEKLKGRTSRIAG-LAVSLTKPSPASGFSPSVQCPNDGFGVYSNSYGPEFAHCREIQWNSLGNGLAYEDFSFPIFLLEDENETKVIKQCYQDHNLSQNGSAPTFPLCAMQLFSHMHAVISTATCMRRSS----IQSTFSINPEIVCDPLSDYNVWSMLKPINTTGTLKPDDRVVVAATRLDSRSFFWNVAPGAESAVASFVTQLAAAEALQK------APDVTTLPRNVMFVFFQGETFDYIGSSRMVYDMEKGKFPVQ---------------------LENVDSFVELGQVALRTSLELWMHTDPVSQKNESVRNQVEDLLATLEKSGAGVPAVILRRPNQSQPLPPSSLQRFLRARNISGVVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFVTDTAKALADVATVLGRALYELAG-GTNFSDTVQADPQTVTRLLYGFLIKANNSWFQSILRQDLRSYLGDGPLQHYIAVSSPTNT-TYVVQYALANLTGTVVNLTREQCQDPSKVPSENKDLYEYSWVQGPLHSNETDRLPRCVRSTARLARALSPAFELSQWSSTEYSTWTESRWK-DIRARIFLIASKELELITLTVGFGILIFSLIVTYCINAKADVLF 698

The following BLAST results are available for this feature:

BLAST of TCONS_00068621-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00068621-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NICA	6.379e-137	34.64	Nicastrin OS=Homo sapiens GN=NCSTN PE=1 SV=2	[more]

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TCONS_00068621-protein (polypeptide) - C. hemisphaerica