TCONS_00068957-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068957-protein
Unique NameTCONS_00068957-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1550

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068957-protein ID=TCONS_00068957-protein|Name=TCONS_00068957-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1550bp
MNNYIKLLIFISFVLTKGQDTDKRVPFIRYHPQSVEVSKGEKIQLRCYVY
GNPIPKVTWYKDNVPVTENKAEGRLVLEDESLVMQKARRSSKHDDTGVYY
CVAKNEVGSDRSNNATVKVRYISNRFRYSPQNATVEMHKIHTMKCRPPNS
YPNATIEWYHNDVLVQPKQYQIDIFDLNGDSHIQFGRITWEERGKYTCHA
SNSEGTKKSEPAYLTVKVIKPDLYSHWTTVEAYVGKTLQLQCFNKFKPEP
DRTWMKREGDMPESSRIGYQYDKSVMIINGAKISDSGEYVCTGENEAGKQ
SIIVKVIVYEKPTFLIQPTDMTIGRGQTATFQCQVKGGKSPTIEWFYNTK
AYSQKFQSGNVIVTKDNDLVISNVDTFGQQSVVCTYRDSISRNQDKKFSP
KVFLKVTSSVNPPPSVQVLTEVKKTEKSDLTLPCVVRTSAGEQASIKWLT
ASDNREVDTGANTVWITAGINSANLTIQGLLTSDSGGYRCVAETPSGTIS
NITMLQVNALLSEKPPKITNLNSVGTSATSITLSWDRPKTAILLPITSYF
LKVKNTGTLETVERFAAGSATKYVVQGLEPDSTYLITINAINKVGNGVAA
NFPFTDTLDANVTPDPSGAEDKLEDVNLGISLGTVTTSTIEVRWNKVSAN
RITGYIVMHREVSKSAFIESEEITPTKTSLVLYGLKANTEYAIKVKAVSS
KHQKESSLKTGKTLNRLPPVAKKVYIEKYSASDMIVFWKISSEDLDLVDT
VEITIQQSDTSSSGNKVPFAKVTLPKTSKKKLFENIDNTKIYYVVVLLKT
VDGKTGKSTEIPAPWARLAVGEKTPDFDAVIPGGEKEEENSLGDIVKEPW
FIATIGVFVWLILLVIVIFICCRKRKKNHQFRGSSSTYESRGLLPTHGTL
DYPNTSLTRTRMSEQHSEHYYNMHKKKKSKFCSCCCDGTDSINSLDDNFP
NRVHIKPIHHPTMRQESFEMSHKPDGLGMNIHKENNVGIAMKNGYMVGAP
LNNERNYRQNSIDNRQYNDRPNPIAYRGGSIDNPSIQGSGSMPRRNPDPK
YQSDSVERRLGEIVRTNKALETSDVNVLANNQQASWKRDKPHKDSPTLSP
KPPGENTLRRQGKFKPLPQLEVLTWADGLPATPQNDDASPPGSPKTDNTR
ADSRMSHGGSSNSLNKYSSHRRRRNSNASSMMSSELYQSEMDPSGYSDIV
SDKKKKKEKAIPPPIHFDGLTSDILLQWAESVTNSSPSSSGSSSPSRLSG
ISSEGSLYTDEDFAQAVAAVAECGGFNMDYDYNLPGMNPNLTPQQVPLSA
TRNSKMNKIDQVLEQRRKNLNTPASSQKQGAAPTPPSFVPQISMSNYLTG
SSKGHQSANGKPHRPKDRGPAPARYGTGLDDVDSVSSSSSKPLTMSNLMK
HDSSLDRGKKESNKPLTMSNLRQHDSSLDRERRVKPQQTPSAPPASYGKP
PPYESNHNTRVDPLLPEAPSLVTSALERNESMNSNSKDSVNSSIKHDSEV
ENNLGTSERKQARKGKKYYANHRDPKSSTSTVNTVRSSPDYDDDDYEADC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042974XLOC_042974Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068957TCONS_00068957Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003598Ig_sub2
IPR003599Ig_sub
IPR003961FN3_dom
IPR013783Ig-like_fold
IPR013098Ig_I-set
IPR007110Ig-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003598Immunoglobulin subtype 2SMARTSM00408igc2_5coord: 233..298
e-value: 4.9E-8
score: 42.7
coord: 425..497
e-value: 0.0011
score: 28.2
coord: 324..391
e-value: 0.36
score: 11.4
coord: 38..108
e-value: 3.6E-7
score: 39.8
coord: 142..205
e-value: 7.9E-4
score: 28.7
IPR003599Immunoglobulin subtypeSMARTSM00409IG_3ccoord: 32..120
e-value: 3.6E-10
score: 49.8
coord: 227..309
e-value: 8.8E-7
score: 38.5
coord: 130..217
e-value: 7.0E-7
score: 38.9
coord: 318..407
e-value: 0.062
score: 22.4
coord: 419..508
e-value: 1.4E-8
score: 44.5
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 624..706
e-value: 1.2E-4
score: 31.4
coord: 515..597
e-value: 4.7E-11
score: 52.7
IPR003961Fibronectin type IIIPFAMPF00041fn3coord: 633..705
e-value: 2.5E-8
score: 34.1
coord: 517..597
e-value: 3.1E-13
score: 49.8
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 626..716
score: 13.886
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 718..821
score: 6.628
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 517..610
score: 16.663
IPR003961Fibronectin type IIICDDcd00063FN3coord: 629..713
e-value: 3.27437E-9
score: 55.1951
IPR003961Fibronectin type IIICDDcd00063FN3coord: 515..597
e-value: 9.54416E-12
score: 62.5139
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 511..602
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 632..803
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 23..123
e-value: 1.9E-20
score: 72.3
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 512..629
e-value: 2.7E-16
score: 59.4
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 225..304
e-value: 1.0E-14
score: 53.8
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 389..508
e-value: 5.6E-15
score: 55.1
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 124..222
e-value: 5.2E-15
score: 55.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 305..388
e-value: 9.0E-14
score: 51.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 630..813
e-value: 1.7E-15
score: 56.8
NoneNo IPR availableGENE3D1.20.5.100coord: 851..880
e-value: 0.0012
score: 17.9
NoneNo IPR availablePFAMPF13927Ig_3coord: 311..385
e-value: 9.4E-9
score: 35.7
coord: 128..202
e-value: 1.0E-7
score: 32.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1128..1214
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1074..1116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1233..1253
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1012..1060
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1321..1550
NoneNo IPR availableCDDcd00096Igcoord: 430..500
e-value: 1.28093E-4
score: 40.9355
IPR013098Immunoglobulin I-setPFAMPF07679I-setcoord: 28..118
e-value: 1.6E-14
score: 53.6
coord: 228..308
e-value: 6.2E-12
score: 45.3
coord: 417..507
e-value: 8.5E-6
score: 25.7
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 140..215
score: 9.845
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 26..118
score: 13.893
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 221..303
score: 9.555
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 312..399
score: 10.172
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 414..500
score: 11.279
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 412..515
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 125..218
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 224..318
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 303..390
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 26..121

Blast
[Close]
BLAST of TCONS_00068957-protein vs. Swiss-Prot (Human)
Match: ROBO1 (Roundabout homolog 1 OS=Homo sapiens GN=ROBO1 PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.344e-70
Identity = 241/914 (26.37%), Postives = 395/914 (43.22%), Query Frame = 0 
Query:   26 PFIRYHPQSVEVSKGEKIQLRCYVYGNPIPKVTWYKDNVPVTENKAE---GRLVLEDESLVMQKARRSSK-HDDTGVYYCVAKNEVGSDRSNNATVKVRYISNRFRYSPQNATVEMHKIHTMKCRPPNSYPNATIEWYHNDVLVQPKQYQIDIFDLNGDSHIQFGRITWEERGKYTCHASNSEGTKKSEPAYLTVKVIKPDLYSHWTTVEAYVGKTLQLQCFNKFKPEPDRTWMKREGDMPESSRIGYQY-DKSVMIINGAKISDSGEYVCTGENEAGKQSIIVKVIVYEKPTFLIQPTDMTIGRGQTATFQCQVKGGKSPTIEWFYNTK-----AYSQKFQSGNVIVTKDNDLVISNVDTFGQQSVVCTYRDSISRNQDKKFSPKVFLKVTSSV-NPPPSVQVLTEVKKTEKSDLTLPCVVRTSAGEQASIKW-----LTASDNREVDTGANTVWITAGINSANLTIQGLLTSDSGGYRCVAETPSGTISNITMLQVNAL-LSEKPPKITNLNSV----------GTSATSITLSWDRPKTAILLPITSYFLKVKNTGTLETVERFAAGSATKY-VVQGLEPDSTYLITINAINKVGNGVAANFPFTDTLDA-NVTPDPSGAEDKLEDVNLGISL------GTVTTSTIEVRWN-KVSANRITGYIVMHREV----SKSAFIESEEITPTKTSLVLYGLKANTEYAIKVKAVSSKHQ-KESSLKTGKTLNR---LPPVAKKVYIEKYSASDMIVFWKISSEDLDLVDTVEITIQQSDTSSSGNKVPFAKVTLPKTSKKKLFENIDNTKIYYVVVLLKTVDGKTGKSTEIPAPWARLAVGEKTPDF-------DAVIPGGEKEEENSLGDIVKEPWFIATIGVFVWLILLVIVIFICCRKRKKNHQFRGSSSTY 888
            P I  HP  + VSKGE   L C   G P P + WYK    V  +K +    R++L   SL   +     K   D GVY CVA+N +G   S+NA+++V  + + FR +P +  V + +   M+C+PP  +P  TI W  +   +  K  +I I    G   I + R +  + GKY C  +N  G ++SE A LTV + +P      + +   V  + + +C  +  P P   W K +G++P+S    Y+  D   + I      D G Y C  EN  GK      + V E P F+++P D  +  G+T TFQC+  G   P I W          +Y     S    V++  DL I+NV        +C      + N       K +L+VT  + + PP V     V +T   D T       +     +I W     L ++ +  +    N V          L I+     D+G Y C+A TPSG  +    ++V    +  +PP+ T+ N +            S  ++TLSW     +   P TSY ++  +  +  + +  A    T+   ++GL+P++ YL  + A N    G++     +D +   +V P   G + K     LG ++        +++S+IEV W     +  I GY +++R       +S ++  E  TP K S+V+  L+    Y IK +   ++ Q  +S +K  KTL      PP    V     + + ++V W+   E     DT    +Q+      GN+           ++  + + +D +    V+  L  V G    S E+ A     +  +  P F       + V P  +      + D+VK+P FIA IG   W+IL+V  I++   ++K+N    G +STY
Sbjct:   68 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHNASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI--RGGKLMITYTRKS--DAGKYVCVGTNMVGERESEVAELTV-LERPSFVKRPSNLAVTVDDSAEFKCEARGDPVPTVRWRKDDGELPKSR---YEIRDDHTLKIRKVTAGDMGSYTCVAENMVGKAEASATLTVQEPPHFVVKPRDQVVALGRTVTFQCEATGNPQPAIFWRREGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQ-----TLNVAGSIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV----------LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPSAPSKPEVTDVSRNTVTLSWQPNLNSGATP-TSYIIEAFSHASGSSWQTVAENVKTETSAIKGLKPNAIYLFLVRAANAY--GISDPSQISDPVKTQDVLPTSQGVDHKQVQRELGNAVLHLHNPTVLSSSSIEVHWTVDQQSQYIQGYKILYRPSGANHGESDWLVFEVRTPAKNSVVIPDLRKGVNYEIKARPFFNEFQGADSEIKFAKTLEEAPSAPPQGVTVSKNDGNGTAILVSWQPPPE-----DTQNGMVQEYKVWCLGNE-----------TRYHINKTVDGSTFSVVIPFL--VPG-IRYSVEVAASTGAGSGVKSEPQFIQLDAHGNPVSPEDQVSLAQQISDVVKQPAFIAGIGAACWIILMVFSIWLYRHRKKRN----GLTSTY 932
The following BLAST results are available for this feature:
BLAST of TCONS_00068957-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ROBO11.344e-7026.37Roundabout homolog 1 OS=Homo sapiens GN=ROBO1 PE=1... [more]
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