TCONS_00068995-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068995-protein
Unique NameTCONS_00068995-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068995-protein ID=TCONS_00068995-protein|Name=TCONS_00068995-protein|organism=Clytia hemisphaerica|type=polypeptide|length=472bp
MSSILQQAQAQNAANIDKNEKQSLLAVLQFLKKKNLKEAEEVLRREAGLD
SVSAEVVTTSANNEPDLTNVLSEYESDGDPLRYEEYYQSLQKFVEQSLDT
HKHELSLVLYPVFVHLYLECIYKGYETEAEKFYEKFSKYQESYRNEDLEK
LRILKRKNHLQTNNEYLNLFRSSKYVIKMARESFNVLKKHLQANQQEVLL
NLIQQHFHLDVFDGRPRSKRAIEATTGYLTGEAPPDANKVKMFYGMPFDS
ELIHALNDDGDSEEEGETSQEKDGKEKPKKKKSKKDDSKKRHATDPHAPK
ADRIPYPKLKDHEKRSKILKYKEVSKRLHVGREKIPSICFYTFLHSTEKI
NCLDISEDSSLIACGFDDSSIKIWSLTPSKLRTLKTPNELSKIDKEADDV
LERIMNDKSATDCRTLCGHSGPVYGLNFNSDKSFLISSSEDGTIRLWSLH
TFTNLVVYKGHLYPVWDVQFSL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042991XLOC_042991Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068995TCONS_00068995Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006594LisH
IPR001680WD40_repeat
IPR007582TFIID_NTD2
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006594LIS1 homology motifSMARTSM00667Lishcoord: 19..51
e-value: 0.0027
score: 26.9
IPR006594LIS1 homology motifPROSITEPS50896LISHcoord: 19..51
score: 9.356
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 409..448
e-value: 8.4E-9
score: 45.2
coord: 336..375
e-value: 2.7E-5
score: 33.6
IPR001680WD40 repeatPFAMPF00400WD40coord: 345..375
e-value: 3.5E-5
score: 24.4
coord: 414..448
e-value: 1.4E-7
score: 32.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 416..457
score: 15.555
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 343..384
score: 9.84
NoneNo IPR availableGENE3D1.10.10.670coord: 443..472
e-value: 8.8E-9
score: 34.7
coord: 336..403
e-value: 3.0E-7
score: 29.7
NoneNo IPR availableGENE3D2.40.50.140coord: 404..442
e-value: 3.8E-10
score: 38.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 258..309
NoneNo IPR availableSUPERFAMILY160897Taf5 N-terminal domain-likecoord: 65..213
IPR007582TFIID subunit TAF5, NTD2 domainPFAMPF04494TFIID_NTD2coord: 78..206
e-value: 3.4E-39
score: 134.0
IPR007582TFIID subunit TAF5, NTD2 domainCDDcd08044TAF5_NTD2coord: 80..213
e-value: 6.20485E-45
score: 153.888
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 343..384
score: 9.626
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 416..472
score: 16.243
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 410..471
coord: 335..378

Blast
[Close]
BLAST of TCONS_00068995-protein vs. Swiss-Prot (Human)
Match: TAF5 (Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3)

HSP 1 Score: 436.417 bits (1121), Expect = 5.332e-146
Identity = 234/511 (45.79%), Postives = 334/511 (65.36%), Query Frame = 0 
Query:   19 NEKQSLLAVLQFLKKKNLKEAEEVLRREAGL--------------DSVSAEV------------------------------VTTSAN--------------NEPDLTNVLSEYESDGDPLRYEEYYQSLQKFVEQSLDTHKHELSLVLYPVFVHLYLECIYKGYETEAEKFYEKFSKYQESYRNEDLEKLRILKRKNHLQTNNEYLNLFRSSKYVIKMARESFNVLKKHLQANQQEVLLNLIQQHFHLDVFDGRPRSKRAIEATTGYLTGEAPPDANKVKMFYGMPFDSELIHALNDDGDSEEEGETSQEKDGKEKPKKKKSKKDDSKKRHATDPHAPKADRIPYPKLKDHEKRSKILKYKEVSKRLHVGREKIPSICFYTFLHSTEKINCLDISEDSSLIACGFDDSSIKIWSLTPSKLRTLKTPNELSKIDKEADDVLERIMNDKSATDCRTLCGHSGPVYGLNFNSDKSFLISSSEDGTIRLWSLHTFTNLVVYKGHLYPVWDVQFS 471
            +++Q+LLAVLQFL++  L+EAEE LRREAGL              DS  AEV                              V+ SA+              ++PD++ VLS Y   GDP  YEEYY  L+ F+E SLD H+ ELS + YP+FVH+YLE +Y  +E EA+ F+EKF   QE Y  +DL  L  L +K H++ N   L+ FR+SK+V++++R+S+ +LK+HLQ  Q   + N++Q+H ++D+FDG PRSK+ I+A  G L GEA  +ANK K+F+G+  + E+   L+     E+E   ++E   K+K  KK S    SKK+   DP+AP  +RIP P+LKD +K  KI+  KE +KR+ +G + +PSICFYTFL++ + +  +D+++DSSLIA GF DS++++WS+TP KLR++K  ++LS IDKE+DDVLERIM++K+A++ + L GHSGPVYG +F+ D+++L+SSSEDGT+RLWSL TFT LV YKGH YPVWD QFS
Sbjct:   92 HDRQTLLAVLQFLRQSKLREAEEALRREAGLLEEAVAGSGAPGEVDSAGAEVTSALLSRVTASAPGPAAPDPPGTGASGATVVSGSASGPAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLD-FRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGLLKEPEIEVPLD----DEDEEGENEEGKPKKKKPKKDSIGSKSKKQ---DPNAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFS 594
The following BLAST results are available for this feature:
BLAST of TCONS_00068995-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAF55.332e-14645.79Transcription initiation factor TFIID subunit 5 OS... [more]
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