TCONS_00069166-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00069166-protein
Unique NameTCONS_00069166-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00069166-protein ID=TCONS_00069166-protein|Name=TCONS_00069166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=515bp
MDLVVFASAFIRNSDHKDDLINKKRSLQSKLFLYLEKNKGIYHGLIIVVI
LVSLALGIGSTIPGYDNGWLFKVRLSVETLLLVIFLTEYLLRVWSSGAHG
TYGAAGGWKKYIITPHMIIDLLVILSSLGLVISTSLNLDPEERRLLYLLQ
LLRILRIDRQRGAFGAFWRVFKKHRKELLTCWYMGFLMVTFVSFLVYSLE
QKRTNDTYTLNNLFDGVYWGVISLTTIGYGDIKPETTSGKILICCFAVFG
TCFLAMPAGIIGSGFALQVAEQQKEKHVNRRRRPAAVLIQSFWRKYAADN
DFPATWIPHTTQHKDYESNLLRTPRKSINHQRSSKPDMFGVPFTPIIPSI
HVTRNENGKGMSSPPSKSSHPVSPAEIPDDFNFSNGYLIPAKKLTTAEKI
ALRFIRFLKCISSMKKFRQARRPYDERDILDQFASAQIEMFAKLRDVKQR
IESCQICSDSKAEKNLNYISKLNDKVGSLHSEISETKELLKILLVQQGID
INKALNNKQQHQDND
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043112XLOC_043112Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00069166TCONS_00069166Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR003937K_chnl_volt-dep_KCNQ
IPR013821K_chnl_volt-dep_KCNQ_C
IPR005821Ion_trans_dom
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 177..200
score: 25.82
coord: 239..265
score: 32.99
coord: 148..174
score: 16.3
coord: 210..232
score: 37.7
coord: 76..99
score: 30.41
IPR003937Potassium channel, voltage dependent, KCNQPRINTSPR01459KCNQCHANNELcoord: 104..123
score: 29.84
coord: 84..103
score: 38.55
coord: 164..183
score: 37.58
NoneNo IPR availableGENE3D1.20.120.350coord: 38..177
e-value: 2.8E-14
score: 52.5
NoneNo IPR availableGENE3D1.10.287.70coord: 178..276
e-value: 3.3E-23
score: 80.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 353..375
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 42..266
IPR013821Potassium channel, voltage dependent, KCNQ, C-terminalPFAMPF03520KCNQ_channelcoord: 391..474
e-value: 2.1E-8
score: 34.1
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 43..269
e-value: 4.0E-19
score: 68.7

Blast
[Close]
BLAST of TCONS_00069166-protein vs. Swiss-Prot (Human)
Match: KCNQ5 (Potassium voltage-gated channel subfamily KQT member 5 OS=Homo sapiens GN=KCNQ5 PE=1 SV=3)

HSP 1 Score: 246.128 bits (627), Expect = 4.800e-72
Identity = 163/515 (31.65%), Postives = 267/515 (51.84%), Query Frame = 0 
Query:   23 KKRSLQSKLFLYLEKNKG---IYHGLIIVVILVSLALGIGSTIPGYDNGWLFKVRLSVETLLLVIFLTEYLLRVWSSGAHGTYGAAGGWKKYIITPHMIIDLLVILSSLGLVISTSLN--LDPEERRLLYLLQLLRILRIDRQRGAFGAFWRVFKKHRKELLTCWYMGFLMVTFVSFLVYSLEQKRTNDTYTLNNLFDGVYWGVISLTTIGYGDIKPETTSGKILICCFAVFGTCFLAMPAGIIGSGFALQVAEQQKEKHVNRRRRPAAVLIQSFWRKYAADNDFP--ATWIPH------------------TTQHKDYESNL-LRTPR-KSINHQRSSKPDMFGVPFTPIIPSIHVTR-------NENGKGMSSPPSKSSHP-----VSPAEIPDDFNFSNGYL--IPAKKLTTAEKIALRFIRFLKCISSMKKFRQARRPYDERDILDQFASAQIEMFAKLRDVKQRIESC----QICSDSKAEKNLNYISKLNDKVGSLHSEISETKELLKI 492
            K R +Q+ L+  LE+ +G   IYH  + +++   L L + STIP +         L +E +++V+F  E+++R+WS+G    Y    G  ++   P  +ID +V+++S+ +V + +          R L  LQ+LR++R+DR+ G +     V   H KEL+T WY+GFL++ F SFLVY +E+    +    +   D ++WG I+LTTIGYGD  P T  G++L   FA+ G  F A+PAGI+GSGFAL+V EQ ++KH  +RR PAA LIQ  WR YAAD      ATW PH                  ++Q   ++  + + +PR +SI  +++S  D    P T I      T+       N+  +   S   KSS P        A   DD     G    +  + LT   K  +R IR +K   + +KF++  RPYD +D+++Q+++  ++M  +++ ++ R++      QI SD K+ + +    +  D +  L   +   K++  I
Sbjct:  107 KYRRVQNYLYNVLERPRGWAFIYHAFVFLLVFGCLILSVFSTIPEHTK-LASSCLLILEFVMIVVFGLEFIIRIWSAGCCCRYRGWQGRLRFARKPFCVIDTIVLIASIAVVSAKTQGNIFATSALRSLRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFSSFLVYLVEKDANKE---FSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAANLIQCVWRSYAADEKSVSIATWKPHLKALHTCSPTKKEQGEASSSQKLSFKERVRMASPRGQSIKSRQASVGDRRS-PSTDITAEGSPTKVQKSWSFNDRTRFRPSLRLKSSQPKPVIDADTALGTDDVYDEKGCQCDVSVEDLTPPLKTVIRAIRIMKFHVAKRKFKETLRPYDVKDVIEQYSAGHLDMLCRIKSLQTRVDQILGKGQITSDKKSREKITAEHETTDDLSMLGRVVKVEKQVQSI 616
The following BLAST results are available for this feature:
BLAST of TCONS_00069166-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNQ54.800e-7231.65Potassium voltage-gated channel subfamily KQT memb... [more]
back to top