TCONS_00069417-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00069417-protein
Unique NameTCONS_00069417-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length545

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00069417-protein ID=TCONS_00069417-protein|Name=TCONS_00069417-protein|organism=Clytia hemisphaerica|type=polypeptide|length=545bp
MSSNGYQVKVYYIENQVTKEIRKFTIETDVASNFDYLGAKIRRVFPSLLR
KDFEIYWKDTDGDYLTISSNDELICAWDSIFESNGCLKLFVKVKKDEQEK
STNDGKGKEHPGVVCDGCDSKIQGIRFKCTTCFDFDLCSSCESKNTHPAN
HELLVIKSPREFGGRPRHPRFGPRGHQRGPFSGPFGPWRGPGMFCRRSPF
GGFAYSCGPAQRKRCGEEEKPQEPEAKRSCSQNSADEKSIGEAVANLAGC
FGLDPEVAKCYFFSFSDDLKEQCEERKQQNSEKCADEKSSDQQEQQDFAT
NLASAFGLQEEFVRHFLTPFLSRENSTREESTQSKSAETKTSTNEAESAS
SEMETDVQQQTEEKTDEQNVDFEVNDEDQKQEPEKVEISDEVDEESKQTS
TETSSQTSKPKEENTEFKHELENMVKHFSEQFGIPNETQQNIQGGLETLL
QGMFNFQQPSQSSTSNTSNNKDDEEPRKPDEFVFVDKTNEEPQLTEEERY
QKNLNKALDKMFAMGFDNDGGWLSQLLVSKDLSIDRVLEALNPSC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043265XLOC_043265Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00069417TCONS_00069417Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000270PB1_dom
IPR000433Znf_ZZ
IPR009060UBA-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000270PB1 domainSMARTSM00666PB1_newcoord: 5..94
e-value: 9.6E-4
score: 28.4
IPR000270PB1 domainPFAMPF00564PB1coord: 8..93
e-value: 5.3E-9
score: 35.8
IPR000270PB1 domainPROSITEPS51745PB1coord: 5..94
score: 15.987
IPR000433Zinc finger, ZZ-typeSMARTSM00291zz_5coord: 109..153
e-value: 2.8E-12
score: 56.8
IPR000433Zinc finger, ZZ-typePFAMPF00569ZZcoord: 110..147
e-value: 4.0E-10
score: 39.2
IPR000433Zinc finger, ZZ-typePROSITEPS01357ZF_ZZ_1coord: 115..141
IPR000433Zinc finger, ZZ-typePROSITEPS50135ZF_ZZ_2coord: 109..155
score: 12.568
NoneNo IPR availableGENE3D1.10.8.10coord: 496..541
e-value: 3.2E-6
score: 26.5
NoneNo IPR availableGENE3D3.10.20.90coord: 18..91
e-value: 1.0E-17
score: 63.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 323..417
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 457..480
NoneNo IPR availableCDDcd02340ZZ_NBR1_likecoord: 113..156
e-value: 5.05801E-18
score: 77.3001
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 105..164
NoneNo IPR availableSUPERFAMILY54277CAD & PB1 domainscoord: 17..93
IPR009060UBA-likeSUPERFAMILY46934UBA-likecoord: 501..543

Blast
[Close]
BLAST of TCONS_00069417-protein vs. Swiss-Prot (Human)
Match: SQSTM (Sequestosome-1 OS=Homo sapiens GN=SQSTM1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.201e-21
Identity = 77/279 (27.60%), Postives = 121/279 (43.37%), Query Frame = 0 
Query:    8 VKVYYIENQ-VTKEIRKFTI-----------ETDVASNFDYLGAKIRRVFPSLLRKDFEIYWKDTDGDYLTISSNDELICAWDSIFESNGCLKLFVKVKK----DEQEKSTNDG-KGKEHPGVVCDGCDSKIQGIRFKCTTCFDFDLCSSCESKNTHPANHELLVIKSPREFGG------------RPRHPRFGPRGHQRGPFSGPFGPWRGPGMFCRRSPFGGFAYSCGPAQRKRCGEEEKPQEPEAKRSCSQNSADEKSIGEAVANLAGCFGLDPEV 257
            VK Y +  +   +EIR+F+                    + L +++  +FP+L    F+ +++D DGD +  SS++EL  A   +   +   ++++K KK    D +     +  +   HP V+CDGC+  + G R+KC+ C D+DLCS CE K  H   H  L   SP  FG             + +H  FG  G + GP          PG +  R P  G A   GP      G  E P         S N    K++GE+VA      G++ ++
Sbjct:    6 VKAYLLGKEDAAREIRRFSFCCSPEPEAEAEAAAGPGPCERLLSRVAALFPALRPGGFQAHYRDEDGDLVAFSSDEELTMAMSYV--KDDIFRIYIKEKKECRRDHRPPCAQEAPRNMVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLH-RGHTKLAFPSP--FGHLSEGFSHSRWLRKVKHGHFGWPGWEMGP----------PGNWSPRPPRAGEARP-GPTAESASGPSEDP---------SVNFL--KNVGESVAAALSPLGIEVDI 257
The following BLAST results are available for this feature:
BLAST of TCONS_00069417-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SQSTM4.201e-2127.60Sequestosome-1 OS=Homo sapiens GN=SQSTM1 PE=1 SV=1[more]
back to top