TCONS_00070717-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070717-protein
Unique NameTCONS_00070717-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length421

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070717-protein ID=TCONS_00070717-protein|Name=TCONS_00070717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=421bp
MNNFGHQHHPYLPRPNSMNFNRMVEPKPIFQQMLNVTQESLQSQPFYNIP
LVKEKLDIHQYAFNAPTLARINAASQQKSNAKKVVISQPTPVSSVPNVTA
NPYSSATPSIANTNRQVQNTPPSLPDNINGRANPAMANQQMFNTPNNVPP
NMLNNVNMSTVNQQPVFNQQPMAGNAFFPPQATPNVMSENANTATTMNQP
VFNNPNMPAGMMTGNLNPSMINQPQAYNSSFFQGNVTNANPTPINQQQAF
PSQSTSQNPIASSFQQKPTPNATAEQLNTNILSQNVFPNSIPNLPENASE
TFTMLDETSQPGTPNAKQSKSSESRANKAAAGELSFKCKECGKGFAQKGH
LKAHEETHSGIRPFSCDICEKKFLRKDHLKRHLAAHSGLKPFKCDYCGKC
YSQKHPLKKHMLVCKEGNSSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043993XLOC_043993Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070717TCONS_00070717Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 392..412
e-value: 19.0
score: 10.8
coord: 364..386
e-value: 0.0047
score: 26.1
coord: 336..358
e-value: 0.0012
score: 28.1
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 338..358
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 366..386
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 336..363
score: 15.978
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 364..391
score: 14.129
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 392..420
score: 9.473
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 332..382
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 373..413
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 300..343
e-value: 3.8E-6
score: 26.6
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 336..358
e-value: 5.4E-5
score: 23.3
coord: 392..412
e-value: 6.1E-4
score: 20.0
NoneNo IPR availableGENE3D3.30.160.60coord: 344..357
e-value: 1.5E-10
score: 40.5
NoneNo IPR availableGENE3D3.30.160.60coord: 378..421
e-value: 7.5E-16
score: 57.8
NoneNo IPR availableGENE3D3.30.160.60coord: 358..377
e-value: 1.8E-14
score: 53.0
NoneNo IPR availablePFAMPF13894zf-C2H2_4coord: 364..386
e-value: 7.0E-4
score: 20.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 232..272
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 305..326

Blast
[Close]
BLAST of TCONS_00070717-protein vs. Swiss-Prot (Human)
Match: ZN235 (Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 5.497e-21
Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 0 
Query:  328 KAAAGELSFKCKECGKGFAQKGHLKAHEETHSGIRPFSCDICEKKFLRKDHLKRHLAAHSGLKPFKCDYCGKCYSQKHPLKKHMLV 413
            +   GE  +KC+ECGKGF+Q  +L+AH+  H+G +PF CD C+K+F +  HL+ H   H+G KP+KCD CGK +SQ+  L+ H ++
Sbjct:  563 RVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQII 648

HSP 2 Score: 82.8037 bits (203), Expect = 5.794e-17
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 0 
Query:  328 KAAAGELSFKCKECGKGFAQKGHLKAHEETHSGIRPFSCDICEKKFLRKDHLKRHLAAHSGLKPFKCDYCGKCYSQKHPLKKHMLV 413
            +   GE  +KC+ CGKGF Q+ HL+AHE  H+G +P+ C  C K+F    +L  H   H+  KP+KCD CGKC+S    L  H  V
Sbjct:  395 RVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRV 480
The following BLAST results are available for this feature:
BLAST of TCONS_00070717-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN2355.497e-2146.51Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 ... [more]
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