TCONS_00071054-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00071054-protein
Unique Name	TCONS_00071054-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	648

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00071054-protein ID=TCONS_00071054-protein|Name=TCONS_00071054-protein|organism=Clytia hemisphaerica|type=polypeptide|length=648bp
MDAFKNKYIQTCQQQNTHPNDAILHAIRESNKRCKSQEGTFILNLAGCNL
SPTDSNVLSKCFATDNYIEQYHFTDCLLSEESCKIILNAFTFNKTLKILD
LKGNNLRASGAELVGKLLKRTSITELFLEWNSLGMWDTGLTAIAEGLALN
TTLRVLDLSNNQISHHGGEEIANALKRNKQLRVLDLRWNNIGMAGGRAFL
NAMTHNKYVVSLELAGNNIPSDTMKAIATSVKRNVDYHSIYEEHHAKTQS
MRQEIDQLQLEKSMQVSTLIDQLEREKELQENVSQSARDRMEHMRAAIED
LKSENRKLKECFDSQSDELKASESVMKELSNKLENTRKEGKLREETMVSE
RLAVAEENTREKAQYQAELLRRVEDIQTITKEKKDMSVRLEVALDEVARL
KESLKKSEERFLEDKRVLSDRCHQDKEELRHQHEHLMKNADQKILRISSD
NERLIEEVTRLKSNILTDKLRFEEESLSQRAKWKQEEIAKSKQYEDRIDL
LLRGKDDLQAKLSKVSVELAETHTQLTSSQKDHEASKRQCEHLQQLMSQR
DLEYRNENNRVKLEVDSERRVNAELKDKVASQDIKIQEIRSQMKDMQSEK
EAEKTRLQDLLRAKEDEMKRTREEELRRAGMLETALQSYISSTRSAYK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044143	XLOC_044143	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00071054	TCONS_00071054	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001611	Leu-rich_rpt
IPR032675	L_dom-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 270..339
None	No IPR available	COILS	Coil	Coil	coord: 491..511
None	No IPR available	COILS	Coil	Coil	coord: 241..261
None	No IPR available	COILS	Coil	Coil	coord: 383..410
None	No IPR available	COILS	Coil	Coil	coord: 558..624
None	No IPR available	COILS	Coil	Coil	coord: 437..457
None	No IPR available	SMART	SM00368	LRR_RI_2	coord: 150..177 e-value: 6.3E-4 score: 29.1 coord: 178..205 e-value: 0.11 score: 21.5 coord: 93..120 e-value: 0.064 score: 22.4
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 18..245
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 150..172 e-value: 0.0054 score: 16.6 coord: 178..199 e-value: 0.011 score: 15.6 coord: 93..113 e-value: 0.0096 score: 15.8
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 152..173 score: 7.165
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 95..117 score: 4.809
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 180..201 score: 5.948
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 128..330 e-value: 7.8E-28 score: 96.3 coord: 32..127 e-value: 2.2E-11 score: 42.1

Blast

[Close]

BLAST of TCONS_00071054-protein vs. Swiss-Prot (Human)
Match: LRC45 (Leucine-rich repeat-containing protein 45 OS=Homo sapiens GN=LRRC45 PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 9.379e-86
Identity = 215/698 (30.80%), Postives = 359/698 (51.43%), Query Frame = 0

Query:    1 MDAFKNKYIQTCQQQNTHPNDAILHAIRESNKRCKSQEGTFILNLAGCNLSPTDSNVLSKCFATDNYIEQYHFTDCLLSEESCKIILNAFTFNKTLKILDLKGNNLRASGAELVGKLLKRT-SITELFLEWNSLGMWDTGLTAIAEGLALNTTLRVLDLSNNQISHHGGEEIANALKRNKQLRVLDLRWNNIGMAGGRAFLNAMTHNKYVVSLELAGNNIPSDTMKAIATSVKRNVDYHSIYEEHHAKTQSMRQEIDQLQLEKSMQVSTLIDQLEREKELQENVSQSARDRMEHMRAAIEDLKSENRKLKECFDSQSDELKASESVMKELSNKLENTRKEGKLREETM--VSERLAVAEENTREKAQYQAELLRRVEDIQTITKEKK---DMS------VRLEVALDEVAR----------------------LKESLKKSEERFLEDKRVLSDRCHQ---DKEELR-----HQHEHL---MKNADQKILRISSDNERLIEEVTRLKSNILTDKLRFEEESLSQRAKWKQEEIAKSKQYEDRIDLLLRGKDDLQAKLSKVSVELAETHTQLTSSQKDHEASKRQCEHLQQLMSQRDLEYRNENNRVKLEVDSERRVNAELKDKVASQDI---KIQEIRSQMKDMQS-------EKEAEKTRLQDLLRAKEDEMKRTREEELRRAGMLETALQSYISST 643
            M+ F+  Y + C++    P +A+L  + +  +          L+LA  +L+      L K    +    +   +DC+LSEE   ++L     N  L+ LDLKGNNLRA+GAE +GKLL++  SI  L LEWNSLG WD        GLA N  L+ LDL NNQISH G EE+A ALK N  L+ LDLRWNN+G+ GGRA +N +  N+ +  L+LAGNNIP D ++A+  ++  + D  + ++E+ A+T  + +E+  L+ EKS Q   L++ +++++E     S+++  R+  ++ A+ +                       S++  L  KL+ T     L E+    + E LA AE+     +Q QA+ L ++E  +   +E K   D+S      + L+  +DE+ R                      LK    ++EER   +KR    RC Q   D E LR     H   HL    K   +++ R+ +    L EE++R+K+  L+++ + EEE +  +++ + EE  +    ED++ LL + +D+ Q    +    +AE  T+++      E  +R+ E LQQ +S +D E   E +RV++E+  +   N  L+ ++A+Q+    K   +  Q+K M S       ++E+E   L++ LR +E E+ R R+EE +RA  L+ A+ +Y+ ++
Sbjct:    1 MEEFRRSYSRLCRESGAEPQEAVLQQLHQLPR--------GRLDLATQSLTVETCRALGKLLPRETLCTELVLSDCMLSEEGATLLLRGLCANTVLRFLDLKGNNLRAAGAEALGKLLQQNKSIQSLTLEWNSLGTWDDAFATFCGGLAANGALQRLDLRNNQISHKGAEELALALKGNTTLQQLDLRWNNVGLLGGRALMNCLPSNRTLWRLDLAGNNIPGDVLRAVEQAMGHSQDRLTTFQENQARTHVLSKEVQHLREEKSKQFLDLMETIDKQREEMAKSSRASAARVGQLQEALNE---------------------RHSIINALKAKLQMTEAALALSEQKAQDLGELLATAEQEQLSLSQRQAKEL-KLEQQEAAERESKLLRDLSAANEKNLLLQNQVDELERKFRCQQEQLFQTRQEMTSMSAELKMRAIQAEERLDMEKR----RCRQSLEDSESLRIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKAAALSERGQAEEELIKAKSQARLEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRRLEELQQELSLKDQERVAEVSRVRVELQEQ---NGRLQAELAAQEALREKAAALERQLKVMASDHREALLDRESENASLREKLRLREAEIARIRDEEAQRASFLQNAVLAYVQAS 661

The following BLAST results are available for this feature:

BLAST of TCONS_00071054-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00071054-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LRC45	9.379e-86	30.80	Leucine-rich repeat-containing protein 45 OS=Homo ...	[more]

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TCONS_00071054-protein (polypeptide) - C. hemisphaerica