TCONS_00072705-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00072705-protein
Unique Name	TCONS_00072705-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	675

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00072705-protein ID=TCONS_00072705-protein|Name=TCONS_00072705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=675bp
QGKRQQAVGNQIHSKNKFKRKMRRSAFSVFKEVASKSPAKSSAESTDDDQ
SKLVSMTRTSDSDLASYPATPKITEKTQKQKSKSEQRLSSIRKSIRKKTK
HKDQTPQENNNTISSSKGKENKLDKALNHIGKKNNWTESLQSLNSSHLEE
EFLPGIVQQKKQQKRLHSEPSATSMFNGSSEEKVQNKSRKRAHSTPSTTD
DAAKKPPIPTKKSKTRSVSSVLDDLPKEDVLETPDEQKPETSADHLFAWV
IAPVKTEQFFSDVWQRKPLFIKRRQSNYNKVWFSTKEFDNILKKQNVQFT
KNLDIAVFRNGQRETLNPDGRAFAPMVWRFYKEGCSIRMLNPATFSSNVW
HLCSKLQEYFGCLVGANVYLTPPASQGFAPHYDDIEAFVVQLEGKKRWRL
YSPRDINETLARHSSQNLSPDELGEPILDRVLEAGDSLYFPRGMIHQAIT
QDDSHSLHLTLSVHQKCCWSDYMEKLVPLALQAAIEEDIDFRKALPIGFQ
NHIGMANSEKKSEERKSFMKTAEQLMKKLVSFVSIDEAGDELALDQMEEY
LPPSLSEDEKQRSVSGTGAFWDNNDIKMKSKITLKSRVRLLRPGIVRLIP
EDENLQIHHTVGNSRQYKELPLSATQVPLQYADIVEYFLLSYPEYVHVKD
APIDDDEIKLELAEKLYDLGLLMTE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045129	XLOC_045129	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00072705	TCONS_00072705	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003347	JmjC_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.120.650		coord: 229..468 e-value: 8.4E-40 score: 136.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..134
None	No IPR available	SUPERFAMILY	51197	Clavaminate synthase-like	coord: 247..562
IPR003347	JmjC domain	PFAM	PF08007	Cupin_4	coord: 257..561 e-value: 3.0E-63 score: 214.1
IPR003347	JmjC domain	PROSITE	PS51184	JMJC	coord: 341..480 score: 23.492

Blast

[Close]

BLAST of TCONS_00072705-protein vs. Swiss-Prot (Human)
Match: RIOX1 (Ribosomal oxygenase 1 OS=Homo sapiens GN=RIOX1 PE=1 SV=2)

HSP 1 Score: 424.091 bits (1089), Expect = 2.949e-140
Identity = 201/434 (46.31%), Postives = 285/434 (65.67%), Query Frame = 0

Query:  243 ADHLFAWVIAPVKTEQFFSDVWQRKPLFIKRRQSNYNKVWFSTKEFDNILKKQNVQFTKNLDIAVFRNGQRETLNPDGRAFAPMVWRFYKEGCSIRMLNPATFSSNVWHLCSKLQEYFGCLVGANVYLTPPASQGFAPHYDDIEAFVVQLEGKKRWRLYSPRDINETLARHSSQNLSPDELGEPILDRVLEAGDSLYFPRGMIHQAITQDDSHSLHLTLSVHQKCCWSDYMEKLVPLALQAAIEEDIDFRKALPIGFQNHIGMANSEKKSEERKSFMKTAEQLMKKLVSFVSIDEAGDELALDQMEEYLPPSLSEDEKQRSVSGTGAFWDNND-IKMKSKITLKSRVRLLRPGIVRLIPEDENLQIHHTVGNSRQYKELPLSATQVPLQYADIVEYFLLSYPEYVHVKDAPIDDDEIKLELAEKLYDLGLLMTE 675
            A  LF W+IAP+  + F+  +W+R+ + ++R+   Y +  FST + D++L+ + VQF ++LD A + NG+RETLNP GRA     W  Y+ GCS+R+L P  FS+ VW   + LQE FG + G+NVYLTPP SQGFAPHYDDIEAFV+QLEG+K WR+Y PR   E LA  SS N S D+LGEP+L  VLE GD LYFPRG IHQA  QD  HSLHLTLS +Q+  W D++E ++PLA+QAA+EE+++FR+ LP  F +++G  +S+ K   R +FM+    L+ +L  F  +D   D+ A D + + LPP L++ E+  SV G    W+  + + + +++T ++ V +L+ GI RL+ E  +L +++TV NSR Y        ++  Q AD +E  L SYPE+V V D P D  E +L LA  LYD GLL+T+
Sbjct:  202 AARLFEWLIAPMPPDHFYRRLWEREAVLVRRQDHTYYQGLFSTADLDSMLRNEEVQFGQHLDAARYINGRRETLNPPGRALPAAAWSLYQAGCSLRLLCPQAFSTTVWQFLAVLQEQFGSMAGSNVYLTPPNSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRVPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTLSTYQRNTWGDFLEAILPLAVQAAMEENVEFRRGLPRDFMDYMGAQHSDSKDPRRTAFMEKVRVLVARLGHFAPVDAVADQRAKDFIHDSLPPVLTDRERALSVYGLPIRWEAGEPVNVGAQLTTETEVHMLQDGIARLVGEGGHLFLYYTVENSRVYHLEEPKCLEIYPQQADAMELLLGSYPEFVRVGDLPCDSVEDQLSLATTLYDKGLLLTK 635

The following BLAST results are available for this feature:

BLAST of TCONS_00072705-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00072705-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RIOX1	2.949e-140	46.31	Ribosomal oxygenase 1 OS=Homo sapiens GN=RIOX1 PE=...	[more]

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TCONS_00072705-protein (polypeptide) - C. hemisphaerica