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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000102 ID=TCONS_00000102|Name=TCONS_00000102|organism=Clytia hemisphaerica|type=transcript|length=1763bp
ttaaaactttggctcggacatacctgtcatcactcgcaaacctagtaccc
cctggGGCTGGGTGTCAATTGCTTATCTTCCTATGACCCTGGTGGTCTGA
TAGCAACCTGTAGCTGCATCTTGAAGAATCTGTTATCATTCACATGAATA
ATAGTTCACAGGCTCTCAGATTACCATTTTTCAACAATGATGCGTTTGAA
GTGGACTAATCGGGTACAAACTTTTGGTCACCTTCAGTCGCTACGTCGCT
ACAACATCTACAATATATTCATCTCCTGCAATTTTTCCCAAAGATTTGCA
AATCTGCAGGGTTTGTAGATTGAAATTTGTTGATTGCCTACATGATTTCT
TTTCACTGCCATAACGAATGCCAACTAAAGGATTGCTAAAAATTGGTTTG
Agggattttttcctgtatttttatcaaaatagtctttcttttcatttcag
AAAACAAAATCTAGTTGTAATGAATGTTATGAATAAATGTAACCCTGAGT
GAAATGTAAACTGCACAATgtcaatttattttaaatgttcAAAGTCGCTT
TCAAGATTTACTCAAAGCCAAACTTGGAGGAAAGTTTTAAATACAACTCG
TTCATATCACAATGAGTTAACTACAAGACCTGCATTGTTACAGCCTGTCC
TGTTCACCGCTGGAGTTAGCATAGGCTCTTTTGCAGGATGCTCCATTCTT
CAATATGAGcgtgtcaaaacaaagatgggtGAAGAATCTTCCATATCCAA
GTTACTGAGGAGGCGTAAAGAAAAAGGATTTGAATTTCGAAACCAGATAA
ATAAATGGTGGAATGGTCTCCATGAAGGTCACAAAGTAGCAGGTGTTATC
ATTGGCATGAATCTACTGGTATTTTCAGCATGGCAACTTAAAGGGTTACG
TTCTTTTATGGTCAAGTGGTTCACTTCAACACCGGCTGTTAAAAAATCTT
CACCATTGTTATTGTCTTGTTTTAGCCACAGTGACATTTGGCATATCGGT
GCAAACATGTTTGTGTTATGGAGTTTTGCACCACTCATTCAATCTTTACT
AGGCACTGAACAATTTATTGGTTTCTATACAGCAGGTGGTACAATATCTT
CTTTAGCAAGTTATTATTTCAAAGTAGCAGTTGGCTCTGCAGTCCCTTCC
CTAGGGGCATCAGGAGCTCTTCTAGCTGTACTGGCAGCATGCTGTATTGA
ACGTCCAGACGCACGACTTTCCATAttatttctaccattttttacaTTCT
CTGCTCAAACTGCACTATACAGTATTATAGCAATAGATGTGACTGGTTTA
TTGTTACGATGGAAGTTATTTGATCATGCAGGACATTTAGGTGGTACCTT
ATTTGGTAGCTGGTATGTTATGAAAGGACATGAATGGACTTGGGATAAAA
GAGGTCCCTTTATAAGATGGTGGCATGAGTTGCGCCAGtcaatgaatgaa
aaataatattttatgtaaTGTTGTCTTGCATCATAGTTTTGTATTAAAAT
CAAGTACAGTGTGTCCCGTTTAAAGCGTTTGGTGTCATACCTGGTCATAT
TAGTTTATatcaatattttatcaaaattaattaACGTGTCAACACTCATT
CACTACTAAGAATAACCGGAtgaattttaaggtttttgaaCCACTTTAAT
TTATACGAGACATCTTGTATTTTATTGTATAACTAGCTTTGtaatactaa
aaaatattttagcttATAAAATTTCTGTTTATTATTAATCTACAAGAGAa
cttaaaattagaa Run BLAST on NCBI transcript from alignment at sc0000001:1933671..1935433+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000102 ID=TCONS_00000102|Name=TCONS_00000102|organism=Clytia hemisphaerica|type=transcript|length=1763bp|location=Sequence derived from alignment at sc0000001:1933671..1935433+ (Clytia hemisphaerica)
ttaaaactttggctcggacatacctgtcatcactcgcaaacctagtaccc
cctggGGCTGGGTGTCAATTGCTTATCTTCCTATGACCCTGGTGGTCTGA
TAGCAACCTGTAGCTGCATCTTGAAGAATCTGTTATCATTCACATGAATA
ATAGTTCACAGGCTCTCAGATTACCATTTTTCAACAATGATGCGTTTGAA
GTGGACTAATCGGGTACAAACTTTTGGTCACCTTCAGTCGCTACGTCGCT
ACAACATCTACAATATATTCATCTCCTGCAATTTTTCCCAAAGATTTGCA
AATCTGCAGGGTTTGTAGATTGAAATTTGTTGATTGCCTACATGATTTCT
TTTCACTGCCATAACGAATGCCAACTAAAGGATTGCTAAAAATTGGTTTG
Agggattttttcctgtatttttatcaaaatagtctttcttttcatttcag
AAAACAAAATCTAGTTGTAATGAATGTTATGAATAAATGTAACCCTGAGT
GAAATGTAAACTGCACAATgtcaatttattttaaatgttcAAAGTCGCTT
TCAAGATTTACTCAAAGCCAAACTTGGAGGAAAGTTTTAAATACAACTCG
TTCATATCACAATGAGTTAACTACAAGACCTGCATTGTTACAGCCTGTCC
TGTTCACCGCTGGAGTTAGCATAGGCTCTTTTGCAGGATGCTCCATTCTT
CAATATGAGcgtgtcaaaacaaagatgggtGAAGAATCTTCCATATCCAA
GTTACTGAGGAGGCGTAAAGAAAAAGGATTTGAATTTCGAAACCAGATAA
ATAAATGGTGGAATGGTCTCCATGAAGGTCACAAAGTAGCAGGTGTTATC
ATTGGCATGAATCTACTGGTATTTTCAGCATGGCAACTTAAAGGGTTACG
TTCTTTTATGGTCAAGTGGTTCACTTCAACACCGGCTGTTAAAAAATCTT
CACCATTGTTATTGTCTTGTTTTAGCCACAGTGACATTTGGCATATCGGT
GCAAACATGTTTGTGTTATGGAGTTTTGCACCACTCATTCAATCTTTACT
AGGCACTGAACAATTTATTGGTTTCTATACAGCAGGTGGTACAATATCTT
CTTTAGCAAGTTATTATTTCAAAGTAGCAGTTGGCTCTGCAGTCCCTTCC
CTAGGGGCATCAGGAGCTCTTCTAGCTGTACTGGCAGCATGCTGTATTGA
ACGTCCAGACGCACGACTTTCCATAttatttctaccattttttacaTTCT
CTGCTCAAACTGCACTATACAGTATTATAGCAATAGATGTGACTGGTTTA
TTGTTACGATGGAAGTTATTTGATCATGCAGGACATTTAGGTGGTACCTT
ATTTGGTAGCTGGTATGTTATGAAAGGACATGAATGGACTTGGGATAAAA
GAGGTCCCTTTATAAGATGGTGGCATGAGTTGCGCCAGtcaatgaatgaa
aaataatattttatgtaaTGTTGTCTTGCATCATAGTTTTGTATTAAAAT
CAAGTACAGTGTGTCCCGTTTAAAGCGTTTGGTGTCATACCTGGTCATAT
TAGTTTATatcaatattttatcaaaattaattaACGTGTCAACACTCATT
CACTACTAAGAATAACCGGAtgaattttaaggtttttgaaCCACTTTAAT
TTATACGAGACATCTTGTATTTTATTGTATAACTAGCTTTGtaatactaa
aaaatattttagcttATAAAATTTCTGTTTATTATTAATCTACAAGAGAa
cttaaaattagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000102-exon-sc0000001-1491911889:1933671..1935433 | TCONS_00000102-exon-sc0000001-1491911889:1933671..1935433 | Clytia hemisphaerica | exon |
| TCONS_00000102-exon-sc0000001-1510915933:1933671..1935433 | TCONS_00000102-exon-sc0000001-1510915933:1933671..1935433 | Clytia hemisphaerica | exon |
| TCONS_00000102-exon-sc0000001-1575043694:1933671..1935433 | TCONS_00000102-exon-sc0000001-1575043694:1933671..1935433 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1933671..1935433 + |
Blast
BLAST of TCONS_00000102 vs. Swiss-Prot (Human)
Match: PARL (Presenilins-associated rhomboid-like protein, mitochondrial OS=Homo sapiens GN=PARL PE=1 SV=2) HSP 1 Score: 231.106 bits (588), Expect = 5.456e-69 Identity = 132/280 (47.14%), Postives = 185/280 (66.07%), Query Frame = 2
Query: 632 ALLQPVLFTAGVSIGSFAGCSILQYERVKTKM-----GEESSISKLLRRRKEKGFEFRNQINKWWNGLHEGHKVAGVIIGMNLLVFSAWQLKGLRSFMVKWFTSTPAVKK-SSPLLLSCFSHSDIWHIGANMFVLWSFAPLIQSLLGTEQFIGFYTAGGTISSLASYYFKXXXXXXXXXXXXXXXXXXXXXXCCIERPDARLSILFLPFFTFSAQTALYSIIAIDVTGLLLRWKLFDHAGHLGGTLFGSWYVMKGHEWTWDKRGPFIRWWHELRQSMNEK 1453
+L++P+ FT G + +F +I QYE +K+++ G ++ +R +KE +FR +INKWWN L +G + II N+LVF W++ L+ M+++FTS PA K SP+LLS FSH ++H+ ANM+VLWSF+ I ++LG EQF+ Y + G IS+ SY KVA G PSLGASGA++ VLAA C + P+ RL+I+FLP FTF+A AL +IIA+D G++L WK FDHA HLGG LFG WYV GHE W R P ++ WHE+R + +K
Sbjct: 97 SLIKPLFFTVGFTGCAFGSAAIWQYESLKSRVQSYFDGIKADWLDSIRPQKEG--DFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPSLQRTMIRYFTSNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFMAVYLSAGVISNFVSYVGKVATGRYGPSLGASGAIMTVLAAVCTKIPEGRLAIIFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGALFGIWYVTYGHELIWKNREPLVKIWHEIRTNGPKK 374
The following BLAST results are available for this feature:
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