TCONS_00002870 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002870
Unique NameTCONS_00002870
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002870 ID=TCONS_00002870|Name=TCONS_00002870|organism=Clytia hemisphaerica|type=transcript|length=457bp
CCTCTATTCTCACCATCAATATTCAACACAGCATCAATGCCATCTCGGAT
CTTTGGTAGGTAGTTAAACCTGCTCACTACAAGAACTTCCAACGAATTCG
GTCTTACAAAAGATAGCATGTTATTCtcattgaaaacgaaagtaatcCCA
TATCTCGAGCTGTGATAAACTGCTTCGATCTGGTCGACAGCTCTTGGACA
TGTTAAAGTATTAACATCTTTCGTAGTTCCTGCTTTTTCCTCATTttcgt
ttgattttgttgtCTCTATTGAGTTAATCGTTGATGAGATTTCTGTGGTG
GAAGGTATAATCATCGCAGGCTGCGTACTCGATTCAAAAGGGTTAATGCT
TGACCCCTCCATCACTGCGTTAGATACTTCCTTAAATTCAGTGGCTGGTT
GATTGGTGCTTGTCATGGTTGATGACGTCTCTACGGTGGGCTCCTGGTAA
TTAGTTG
Run BLAST on NCBI

transcript from alignment at sc0000023:408107..408637-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002870 ID=TCONS_00002870|Name=TCONS_00002870|organism=Clytia hemisphaerica|type=transcript|length=531bp|location=Sequence derived from alignment at sc0000023:408107..408637- (Clytia hemisphaerica)
CCTCTATTCTCACCATCAATATTCAACACAGCATCAATGCCATCTCGGAT
CTTTGGTAGGTAGTTAAACCTGCTCACTACAAGAACTTCCAACGAATTCG
GTCTTACAAAAGATAGCATGTTATTCTCATTGAAAACGAAAGTAATCCCA
TATCTCGAGCTGTGATAAACTGCTTCGATCTGGTCGACAGCTCTTGGACA
TGTTAAAGTATTAACATCTTTCGTAGTTCCTGCTTTTTCCTCATTTTCGT
TTGATTTTGTTGTCTCTATTGAGTTAATCGTTGATGAGATTTCTGTGGTG
GAAGGTATAATCATCGCAGGCTGCGTACTCGCTTCAAAAGGGTTAATGCT
TGACCCCTCCATCACTGCGGTAGATACTTCCTTAAATNTGCAGGCTGCGT
ACTCGATTCAAAAGGGTTAATGCTTGACCCCTCCATCACTGCGTTAGATA
CTTCCTTAAATTCAGTGGCTGGTTGATTGGTGCTTGTCATGGTTGATGAC
GTCTCTACGGTGGGCTCCTGGTAATTAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001561XLOC_001561Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002870-exon-sc0000023-1575043694:408319..408637TCONS_00002870-exon-sc0000023-1575043694:408319..408637Clytia hemisphaericaexon
TCONS_00002870-exon-sc0000023-1575043694:408107..408244TCONS_00002870-exon-sc0000023-1575043694:408107..408244Clytia hemisphaericaexon
TCONS_00002870-exon-sc0000023-1510915933:408319..408637TCONS_00002870-exon-sc0000023-1510915933:408319..408637Clytia hemisphaericaexon
TCONS_00002870-exon-sc0000023-1510915933:408107..408244TCONS_00002870-exon-sc0000023-1510915933:408107..408244Clytia hemisphaericaexon
TCONS_00002870-exon-sc0000023-1491911889:408319..408637TCONS_00002870-exon-sc0000023-1491911889:408319..408637Clytia hemisphaericaexon
TCONS_00002870-exon-sc0000023-1491911889:408107..408244TCONS_00002870-exon-sc0000023-1491911889:408107..408244Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:408107..408637 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.364867	0	0.247549	0.0303621	0	0.159144	0	0.0532349	0.0957585	0.992899	0	0.256309	8.9383	6.53699	1.63355	2.26797	4.08551	2.6191	0.321181	0.0463384	0.229072	0.509696
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002870 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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