TCONS_00003153 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003153
Unique NameTCONS_00003153
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1857

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003153 ID=TCONS_00003153|Name=TCONS_00003153|organism=Clytia hemisphaerica|type=transcript|length=1857bp
ATAAAACTTGAAGCGTGGCTGAAATGTTTATCTCCACAATGTCAAAAATA
ATAGTGATGTTGATGTGGCGCAAGATTCAAAACACCAACCAGCAACCACC
GATGACCTACCGAAAGGAGCAGTAAACAAAGTCCACAACAAATTTCTCCA
TTTTTCAGAGGCAGAAGACATGGCTGGTTCAATGCGCATTTTAAAATTTG
CTGGTACAATAGCACTGGTCATATTCTTTTACGCAAGCTCAATATGCTTA
ACATTTTATAATAAATGGATGTCAAAGaaatataCATTTCCATTGACAGT
AGCAATGGTCCATTTTGTAACAGTTTTTCTCTTGGCTGCATTCTTCAGAC
GGCTACTTGAGATATACCAAAAAGAAGATAGGACTGTACTGGATTGGAAA
GTATATATCAAAAAGGTTTTTCCATCAGCAATATCTGCGTCACTGGACAT
TGGATTGTCAAACTGGAGTATTATGCTAAGCACTGTTTCCTTatatACAA
TGGCAAAGTCTACAGCAATCATCttcattcttttattttctgtGATGCTA
GGATTAGAGAAACCACTCatcataatttttatttaaagacCAAATCTTTG
ATCCTTGTGGTGCTGCTGATTAGCGTTGGTTTGTTCTTGTTTACATTCAA
CTCAAGTCAATTTGATATGTTTGGCTTTGTTATTGCACTGATTGCAGCTG
TATTTTCTGGTCTCCGTTGGACCACAACTCAGCTTCTCATGCAAAAGAAA
TCAATGGGTCTTCAAAATCCTTTAGATGCCATTTTTCATATCCAACCCGT
CATGGCGTTAACCATGGTTGTATTTGCTTTCTCAATGGAAGGACCTCAAT
TTGCATCGTCATCCCTAATCTTTCGATATTCAAGCTTCCATGTTTTGCTG
ACATCCCTGGTTATCATACTGTCTGGTGCTTTTCTAGCCTTTTTGTTGAC
AATATCAGAATATTTAATGGTGTCTCAAACTTCGAGTCTGGCTTTATCAA
TCGCCGGTATATTAAAGgAACTAGTGACATTAACAATAACAGCAGAATTA
GGTGGTGATCGGATGAACGGTGTTAATGTGATTGGATTGATCATTTGTAT
GACTGGCATAAGTGTTCATGTGGTTTCTAAAGCACTTAATGAAAACAACA
GTGGTGGAAGTGTGAATAGAGCCTTAACAGACGATGAAAACCCTGATTCC
ATTGCATTCAAATCGTTACTTACTGAAGAAGATTTTGATGAAGAGATATT
GTTTGAATCGAATCATTCTTCAAAAGGTTGGAAAACACTCTCGACGTTGG
AGTAGCTGATGTGATTCTAGTGAAATGTGATAAAGTAGAGTCGGTATTTA
TTACGTGACCAGCCCAGTTATCATGAAACGGCCAGAAAACTCGGCCTCTT
TTAGCTCTTTTGAAGGAACAGGGTCTCGAACTGCCAACCCCTGGTTTGGT
TTGAGGTGTTGATGTCTGGACCACTCGGCACTCGCTCTACATATGACTTC
ACCTGTAACTACAACCATCCTTTGATTTACTCGAGTTTTCGAGTCAAggt
tcaaattattcaaaatgctTTGAAGTGTCAAGGTTCAAATACTGTTTGAT
TATCAGGAGCAGTAGCTGATAATTTGGATGATAATCAACATCTTAATACA
CTTAGGTGAAGTATAGTAAAAAATGACACTTTCTTACAAAGATAACCCTG
AAACTTgcaataaaagtaaataaactcCATTTGAAACGAGAAATCGGAAA
TCTGGTGTATTTCAATCATAGATGATATTTTTATTGCTTAgctaaaattt
ttatatttttcattattttctaaCAGCTTAAATATAAAACCGAAAAcaga
atgaaaa
Run BLAST on NCBI

transcript from alignment at sc0000025:226857..233960-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003153 ID=TCONS_00003153|Name=TCONS_00003153|organism=Clytia hemisphaerica|type=transcript|length=7104bp|location=Sequence derived from alignment at sc0000025:226857..233960- (Clytia hemisphaerica)
ATAAAACTTGAAGCGTGGCTGAAATGTTTATCTCCACAATGTCAAAAATA
ATAGTGATGTTGATGTGGCGCAAGATTCAAAACACCAACCAGCAACCACC
GATGACCTACCGAAAGGAGCAGTAAACAAAGTCCACAACAAATTTCTCCA
TTTTTCAGAGGCAGAAGACATGGCTGGTTCAATGCGCATTTTAAAATTTG
CTGGTACAATAGCACTGGTCATATTCTTTTACGCAAGCTCAATATGCTTA
ACATTTTATAATAAATGGATGTCAAAGGTATGCAATTTTGAATTTAGCAA
AATCATCATCAGTTTGGCAAACAATATCATCCTCTAGGATGCAAGTCAAA
TTTTTTAAGTCTCTGGACCTAGACGGAGGCTTGATTATTATCAGTTAGGG
TTACGGTTGAAGCTCGAGAGTCACAATCTGACGCCTTCTTAGCTAGGGGC
ACCAGCAGTAGCAGTAATAAGTAGGGTTGGGAGCTATTGGGAACCAAGGT
TGCTTGCATTTGGTATAAGGGGAAGATTTCAGAACAATACAAAAACAGAG
TTAGAAACACTTGAGAAAGACACAGACAGAAAATCAGGAAAGAAGGTAAG
ATTCCACATAAAAATGTCTGGGACGATTGGTTGAAACATGATGGGACTGT
TGCATATCTGGTCTGTATTTTCACTTACTGTAAAATCGAAAGAGAAATCG
TGTATTTTTTAATACGCCGCTCATTAACTCAAATAAAATGACTTTGGAGG
TTCGGTGAAATGGTGGATGGCCGTCCCATGTTTTGTCAGATAGATAAACC
ATCTTATCAGAAAGTTTGTCTCTTCCTGATGTTGCCGCACAACACTTAAC
ACTTAGATAAGTCCCAAAATGGTGGATTTCAAGCAAAAAGCCTTACAAAA
CAGCCAAAATATCGACTCCAAAAAAGCCAAAAAGACAAAGGAAGTGCCAT
CAAAGTTGTTGCTTTTCTTTCTCTCGTAGCTTCTGCTTGCATCTTAGATT
CTTTGTTTATATTACTTTCAGTATTGTTTACCTCTGCATATGGAGTCAAT
GGGTCTATTTTAGCGCTGTTGTTTTGGTGGAGATTCTAATAGGCGTATTC
AAGATATACATCCATATCTAAGGCAGTAAGAATCCTAATTAGTTGTATTG
CAAGACCATGAAAATATATATTGCATAGTGTAGCTTGGCTCAGATTCATT
ATATCTTAGGTAACATTTGCTTTTTATTCTTTTTATTTTTAGAAATATAC
ATTTCCATTGACAGTAGCAATGGTCCATTTTGTAACAGTTTTTCTCTTGG
CTGCATTCTTCAGACGGCTACTTGAGATATACCAAAAAGAAGATAGGACT
GTACTGGATTGGAAAGTATATATCAAAAAGGTTTTTCCATCAGGTAAACA
GATACTCTTTTTAAAGGTGTAATTTACTATGATTTACTTACTTACTTTGG
TATTTCGGAATTCTGAAATTGTTTCGGTATCAGAAATCCATGAATTTTTG
CTACAAAATTTCGGTATTATAAAGTTTTTATCCCCTTTTTTCGGAATTCA
TACATGAAAAATCAAATTTGATGAAAAATTAGTCAGAACGAGGAAAAATA
CATAAGTATTTTTTTACGAATTTCGGAAATTTTGGCAAAATTATTTGGTA
TTTCGGAAATCGCAAACCCTGTACGCCCCCATTAAATGCTGGCTTCAAAA
ATCTGCAAAAATCTCTATTTTTATTTTTTATTAAAGATTGTATTTTTTTC
TTATTTTATAAGCAATATCTGCGTCACTGGACATTGGATTGTCAAACTGG
AGTATTATGCTAAGCACTGTTTCCTTGTAGGTAGTATGAGGTGCTTATGT
ATCTATTCTATCGGCGCCCCATGAAGAACTTCAGACAGTTTTTTTACGTT
TAGTGCGCGAACAAATCTCTTTTAAATACTTGGATTTGATTATAGAAAGT
ATATATCATTTATTTTTTTTTGAATTTGGATTTTAAAATCTAATAGCTAT
AGAATGTTTTGAGCCAAATTTAGAAAAAGTAATTCCTCAAATTTTAAGTT
AGGTTGTATCCTTTCTAAGTTCTTAATATAAGAAATTAAGAGGTCATCTT
TTTCGGCTTTAAGAAGTCAAATGTCCTACTGTCCTAGGTCACCTAGATTA
TCAATTTTATACACCCTTGTAATTTCAAGATCCCATTACATGGAATACTC
TGCCTTAAAAATTAGCTGATTCACTTTTATTTATCTTTTATTGCTTTTAA
ACAAACACTTTCAAAAGTTTCCACTTTTCGGCTTCCTTACTGTAAAATTT
AAAACACAACTAACCAGTACAAATTATACGCATAGTTCTTCAGTTTACAC
AACTTTTTCTTTTTTCTTTTTAGATATACAATGGCAAAGTCTACAGCAAT
CATCTTCATTCTTTTATTTTCTGTGATGCTAGGATTAGAGAAACCAGTAA
GTGCTAAAAAATTCGACGATACTATCAGTATTTTTGCCAAGGATAAGTTT
TGATTTTTAGTTATTCTTCCTTTATATTTATTTCCATAAAATACTTTGTT
GATTATCTGCCTTCGCACGCTTTAACTTTAAAATCAAGCAATACAACGTT
TTAATTATTAACAGCTCATCATAATTTTTATTTAAAGACCAAATCTTTGA
TCCTTGTGGTGCTGCTGATTAGCGTTGGTTTGTTCTTGTTTACATTCAAC
TCAAGTCAATTTGATATGTTTGGCTTTGTTATTGCACTGATTGCAGCTGT
ATTTTCTGGTCTCCGTTGGACCACAACTCAGCTTCTCATGCAAAAGAAAT
CAATGGGTATGTAAAAAAACTGCGAGATTTCCAAGTATGACCATTTATAA
AGCTGACCTTTTCACCATTGTATATTATTATTTGTTATGAATATTAAAGT
CCCTCTCAGTTGACAAAAAATACACACATTCCACAGGAAAAAATCCGTGA
ATCACATGCGTGTGAAAACCAATTTCCGAGCATGTGATCCTGCAAAAAAT
CACATGCGTGTGAAAATGTAATTCACAATCCATCTTTTCTCACTTTTGAA
ATAGAATAGAAGTGAGTTACTTTTAGGGTATTAAACCTCTCTCTCTAAGA
AATACAAACAATCCTATTTGTGATTTTAAATCTGGTCACACCCCATTTAA
TAAGTCGAGAAAAGATGGCTTGTGAATTGTATTTTCACACGCTTGTAATT
TTTTTCAGAATCACATGCACAGAAATCAGTTTTACCAAGCATGTGATTTC
CATACTTTTTCCTGTGTTCATCACACAACTTATTTCCAAAATTCACACAT
TCACCCAAAAAGCTTTTTCAAAAACCCATCTAACTGCACTCAAATGATTT
TTTAATAAGACTTAGAAAAATGGGGAAAATTTTACAAATTAAGATTGGAA
TTTCACATATTTACTCCAAAAAGTTGTGAGCTTCCTGCATATTCACTCAA
AAAGAAAATCAAAATAAAGTGCATTTTCTAGCAAATTATTTCAGTNATCC
GTTGGACCACAACTCAGCTTCTCATGCAAAAGAAATCAATGGGTATGTAA
AAAAACTGTGAGATTTCCAAGTATGACCATTTATAAAGCTGACCTTTTCA
CCATTGTATATTATTATTTGTTATGAATATTAAAGCCCCTCTCAGTTGAC
AAAAAATACACACATTCCACAGGAAAAAATCCGTGAATCACATGCGTGTG
AAAACCAATTTCCGAGCATGTGATCCTGCAAAAAATCACATGCGTGTGAA
AATGTAATTCACAATCCATCTTTTCTCACTTTTGAAATAGAATAGAAGTG
AGTTACTTTTAGGGTATTAAACCTCTCTCTCTAAGAAATACAAACAATCC
TATTTGTGATTTTAAATCTGGTCACACCCCATTTAATAAGTCGAGAAAAG
ATGGCTTGTGAATTGTATTTTCACACGCTTGTAATTTTTTTCAGAATCAC
ATGCACAGAAATCAGTTTTACCAAGCATGTGATTTCCATACTTTTTCCTG
TGTTCATCACACAACTTATTTCCAAAATTCACACATTCACCCAAAAAGCT
TTTTCAAAAATCCATCTAACTGTGCTCAAATGATTTTTTAATAAGACTTA
GAAAAATGGGGAAAATTTTACAAATTAAGATTGGAATTTCACACATATTT
ACTCCAAAAAGTTGTGAGCTTCCTGCATATTCACTCAAAAAGAAAATCAA
AATAAAGTGCATTTTCTAGCAAATTATTTCAGTTTATGCAATATTCTTAG
ATTTTTATGCATTTAATGTGAACCACTGAGGGTTTTTTCATGCAATGGTG
AACCACTGGGGTTTTTTAATATAAAACAGTAAATTTTAGCTGAGCCTCAT
CTGTTCTTATTTATCTCAAATGTTTTTAAAATGTTCTTAAGTATTCACTA
AGTATAAAACAGTAAATTTTAGCTGAGCCTCATCTGTTCTTATTTATCTC
AGTCAAATGTTTTTAAAATGTTCTTAAGTATTCACTAAGTATAACGTGCT
TATGTAACTTTACATAATATAATATTATGATTACAACGAGAAAAATTAGC
ATATGTCAGCACAAAATAATAATCAATAAAATGTATTGTTTTTCTTTCAA
CCAGGTCTTCAAAATCCTTTAGATGCCATTTTTCATATCCAACCCGTCAT
GGCGTTAACCATGGTTGTATTTGCTTTCTCAATGGAAGGTATGTTGTATT
TAACAATATAAAAATAAACATAATAAAGAACCAGGATTTTTCGCAAAGTA
CTCTCATTGCCTAATAAACTCTTTACAACAATAATTTTTCCCAATCCCCC
AGACCTTAAAGGATCCTTAGGTAAATCTTGAGCTGTGAAAATGAAAGTCA
CTTTTAGTTTTAATAAGAACCTTTGCTGTACAAATTCCACTTCGACAATT
GCTTCTGTGTATAATGAAATTTGATGATTTTCCTACCCCCGTTTATGAGG
CACCTGGTACGGATAGCCTTAGGATAATCTAAAGAAAATATACTATTTTG
CTGGCCATAATACACAAACGTTGTCCACACGCTGTAAACAACCTCGTGCT
TAACCTCGACTAATGTCATTATGGTGCTTAAAATTGTTATGTTTTACCGA
GTATATGGGCTGGATACCAAGTTTTTTAAGGGCTTCTGACCATAGTAAGA
AAATTTGATTTTTCTTTTTAAAGATGGAGCTTTTTGTTTTAGATTAGAAA
AAGAGCAGATTGATTAAGGGTCAATCAATGTCAATTTCTTTTCACAGGAC
CTCAATTTGCATCGTCATCCCTAATCTTTCGATATTCAAGCTTCCATGTT
TTGCTGACATCCCTGGTTATCATACTGTCTGGTGCTTTTCTAGCCTTTTT
GTTGACAATATCAGAATATTTAATGGTGTCTCAAACTTCGAGTCTGGCTT
TATCAATCGCCGGTATATTAAAGGTATATTTTTTCTCCTGCCTTTTAGCG
TATTGTTGAGATTCAAAATCGAGACAAGTTTTTTTGGTTTAGAGGTTAAT
GATAGATGTCTTGGTCTTAGTGTAGCGCCTTGGATTCTCAGAGTTCTTAA
AATCCATAAATTCAACTATACTATATATCACACCCTTTTCTTACAGACCT
ATTGGGAACCCTTTGCACTGAAAAAATTGCCCAAAATATCGTCCCCGGTG
GAAAATTTTCCTCCAATTTTTATACCCACTGAAAAGTAAACCAATCTTCG
CTGCAAAATGTTATGCTATTTTTTTTAATCCCCACTGAATTTTCTCTGAC
TTGAAAACAAAAGAATTTCAATCCCCAGCCATAAAAGATATGGGGATATA
AATTCCATCGCGTCAGTCCGTTATTTTTATTCCCACTGGATGAAAAAATC
ATACCGGGTCTATGAGAAGGGAGTGTTATATGTGACTTAGTCGTCTTCAG
CACTGCTTAACGAAAATTCTTTTCCTCTTAGTTTCATCTTCAGTTTCTTC
AGATTTTTATTTATTATTTTGCTTGGGGAAATTTATTTACTTTTTTCTTT
CTAGGAACTAGTGACATTAACAATAACAGCAGAATTAGGTGGTGATCGGA
TGAACGGTGTTAATGTGATTGGATTGATCATTTGTATGACTGGCATAAGT
GTTCATGTGGTTTCTAAAGCACTTAATGGTGAGTTGATTGATCCGTTAAT
CTTTTGTCTTCAATCCTGTCAATGATTTAAGCCCGAAATAACTCCCAAGA
GAGCTATTTTCACTACCTGTAAATTCTTCTCGGGTCTGGAAATGTTCGTC
AATCTGTATAGATATAAAATGTAATAACCCAATATGACGACGAATGTGTG
AAGGATGTGTGTAATATTTGGCCATTTTTGGCTTTTGAGAGTCTTTTTTC
AAATTCAGTACGATAGCTTAATGTTTTGTTACTTTTAGAAAACAACAGTG
GTGGAAGTGTGAATAGAGCCTTAACAGACGATGAAAACCCTGATTCCATT
GCATTCAAATCGTTACTTACTGAAGAAGATTTTGATGAAGAGATATTGTT
TGAATCGAATCATTCTTCAAAAGGTTGGAAAACACTCTCGACGTTGGAGT
AGCTGATGTGATTCTAGTGAAATGTGATAAAGTAGAGTCGGTATTTATTA
CGTGACCAGCCCAGTTATCATGAAACGGCCAGAAAACTCGGCCTCTTTTA
GCTCTTTTGAAGGAACAGGGTCTCGAACTGCCAACCCCTGGTTTGGTTTG
AGGTGTTGATGTCTGGACCACTCGGCACTCGCTCTACATATGACTTCACC
TGTAACTACAACCATCCTTTGATTTACTCGAGTTTTCGAGTCAAGGTTCA
AATTATTCAAAATGCTTTGAAGTGTCAAGGTTCAAATACTGTTTGATTAT
CAGGAGCAGTAGCTGATAATTTGGATGATAATCAACATCTTAATACACTT
AGGTGAAGTATAGTAAAAAATGACACTTTCTTACAAAGATAACCCTGAAA
CTTGCAATAAAAGTAAATAAACTCCATTTGAAACGAGAAATCGGAAATCT
GGTGTATTTCAATCATAGATGATATTTTTATTGCTTAGCTAAAATTTTTA
TATTTTTCATTATTTTCTAACAGCTTAAATATAAAACCGAAAACAGAATG
AAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001745XLOC_001745Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003153-exon-sc0000025-1575043694:233684..233960TCONS_00003153-exon-sc0000025-1575043694:233684..233960Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1575043694:232568..232718TCONS_00003153-exon-sc0000025-1575043694:232568..232718Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1575043694:232135..232198TCONS_00003153-exon-sc0000025-1575043694:232135..232198Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1575043694:231515..231587TCONS_00003153-exon-sc0000025-1575043694:231515..231587Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1575043694:231155..231346TCONS_00003153-exon-sc0000025-1575043694:231155..231346Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1575043694:229273..229356TCONS_00003153-exon-sc0000025-1575043694:229273..229356Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1575043694:228538..228713TCONS_00003153-exon-sc0000025-1575043694:228538..228713Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1575043694:227833..227956TCONS_00003153-exon-sc0000025-1575043694:227833..227956Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1575043694:226857..227572TCONS_00003153-exon-sc0000025-1575043694:226857..227572Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1510915933:233684..233960TCONS_00003153-exon-sc0000025-1510915933:233684..233960Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1510915933:232568..232718TCONS_00003153-exon-sc0000025-1510915933:232568..232718Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1510915933:232135..232198TCONS_00003153-exon-sc0000025-1510915933:232135..232198Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1510915933:231515..231587TCONS_00003153-exon-sc0000025-1510915933:231515..231587Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1510915933:231155..231346TCONS_00003153-exon-sc0000025-1510915933:231155..231346Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1510915933:229273..229356TCONS_00003153-exon-sc0000025-1510915933:229273..229356Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1510915933:228538..228713TCONS_00003153-exon-sc0000025-1510915933:228538..228713Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1510915933:227833..227956TCONS_00003153-exon-sc0000025-1510915933:227833..227956Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1510915933:226857..227572TCONS_00003153-exon-sc0000025-1510915933:226857..227572Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1491911889:233684..233960TCONS_00003153-exon-sc0000025-1491911889:233684..233960Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1491911889:232568..232718TCONS_00003153-exon-sc0000025-1491911889:232568..232718Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1491911889:232135..232198TCONS_00003153-exon-sc0000025-1491911889:232135..232198Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1491911889:231515..231587TCONS_00003153-exon-sc0000025-1491911889:231515..231587Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1491911889:231155..231346TCONS_00003153-exon-sc0000025-1491911889:231155..231346Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1491911889:229273..229356TCONS_00003153-exon-sc0000025-1491911889:229273..229356Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1491911889:228538..228713TCONS_00003153-exon-sc0000025-1491911889:228538..228713Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1491911889:227833..227956TCONS_00003153-exon-sc0000025-1491911889:227833..227956Clytia hemisphaericaexon
TCONS_00003153-exon-sc0000025-1491911889:226857..227572TCONS_00003153-exon-sc0000025-1491911889:226857..227572Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:226857..233960 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.409743	0	0	1.21326	0	0	0	0.303917	0	0.227773	0.731617	0	0	0	0	0	1.35927	0	0	0	1.60965	0	0	0	0
Blast
[Close]
BLAST of TCONS_00003153 vs. Swiss-Prot (Human)
Match: S35C2 (Solute carrier family 35 member C2 OS=Homo sapiens GN=SLC35C2 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 4.443e-65
Identity = 83/186 (44.62%), Postives = 120/186 (64.52%), Query Frame = 1 
Query:  643 TFNSSQFDMFGFVIALIAAVFSGLRWTTTQLLMQKKSMGLQNPLDAIFHIQPVMALTMVVFAFSMEGPQFASSSLIFRYSSFHVLLTSLVIILSGAFLAFLLTISEYLMVSQTSSLALSIAGILKELVTLTITAELGGDRMNGVNVIGLIICMTGISVHVVSKALNENNSGGSVNRALTD-DENPD 1197
            T+ S+QF++ GF + L A+   G+RWT TQ+L+QK  +GLQNP+D +FH+QP+M L +       EG   ++S  IFR+    +LL  L  +  G  LAF L  SE+L+VS+TSSL LSIAGI KE+ TL + A L GD+++ +N +G  +C++GIS+HV  KAL+    GG   +AL     +PD
Sbjct:  155 TYKSTQFNVEGFALVLGASFIGGIRWTLTQMLLQKAELGLQNPIDTMFHLQPLMFLGLFPLFAVFEGLHLSTSEKIFRFQDTGLLLRVLGSLFLGGILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHLLGDQISLLNWLGFALCLSGISLHVALKALHSRGDGGP--KALKGLGSSPD 338

HSP 2 Score: 114.005 bits (284), Expect = 4.443e-65
Identity = 56/119 (47.06%), Postives = 85/119 (71.43%), Query Frame = 2 
Query:  206 TIALVIFFYASSICLTFYNKWMSKKYTFPLTVAMVHFVTVXXXXXXXXXXXEIYQKEDRTVLDWKVYIKKVFPSAISASLDIGLSNWSIMLSTVSLYTMAKSTAIIFILLFSVMLGLEK 562
            T+ LV+ +Y  SI +TFYNKW++K + FPL + M+H   +FL +A  R L++      R VL W  Y+++V P+A++ +LD+GLSNWS +  TVSLYTM KS+A++FIL+FS++  LE+
Sbjct:   17 TLGLVLLYYCFSIGITFYNKWLTKSFHFPLFMTMLHLAVIFLFSALSRALVQCSSHRARVVLSWADYLRRVAPTALATALDVGLSNWSFLYVTVSLYTMTKSSAVLFILIFSLIFKLEE 135
The following BLAST results are available for this feature:
BLAST of TCONS_00003153 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S35C24.443e-6544.62Solute carrier family 35 member C2 OS=Homo sapiens... [more]
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