TCONS_00003221 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003221
Unique NameTCONS_00003221
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003221 ID=TCONS_00003221|Name=TCONS_00003221|organism=Clytia hemisphaerica|type=transcript|length=1459bp
CGTGCTTAAAAAACAATTTCTAGTGATAATtcataaattataaaaattga
TTACATTTAATATTTTGCATTTTACtaaaaatcaattgaaaaaaGGGCTT
aacaacaaaacttttaaatattctaaaaaacAGAAGgtgaaataaatttg
atttgttgttctacgAGCAGATCAACAGAATATATGGGTTGGTCATTTTT
TCAGTCCCGTATAACTAACAAACTGAATTTCTTTCACCTAGgtaattcac
aaaaaaattctaaaataaattatttatacaaattcttatataaaaactcA
ATGTGCAGAGATTCTCATTCTTTTGCAAGCATggaaatcattttcatctt
tgtCACATTGATCATCATCTGAATTGACAGGTCCACTCTGAAGCACACAT
TCTGGGAAAAGTTCTTTGAAACAATCAACTTTCTCCCTGGTCAGTTTATT
GCAACCACCGACATTTAAATCAGTTAATTGATTACCTTTGATGACATTCT
CAAAACACTTATCAGTCAATTCATGACAACTATACAAATCAAGTTTCCTC
AATGTCTTTTTGGTGCAAGATGTATCTCTAAATAACTCATTTATACCATA
ATCAGTCAAAAGGTGACAAAATCGGAGTAATAATTCTGTCAATTCCAATT
TTGCTAAATGAAATAATGCAACATTATTGATACCAGGACATCCTGAAAAA
TCTAAATGCTTCAAACTTCTCAAATTAGTCACTAAGGTAGGGATTCCTCT
GGCAGATATACGATAACAATTACACAGTACCAGCCTTTCCAAACTCTTCA
AATAAGAAATAGCTTGCAAATCATTATTTGCAACTTTGCTACAAGTATGC
AGATCCAAGGTCTGCAGATTTGGTAACAAGTTTCCATGTTCTAAGCCTTC
AAACCATTTCATTGGAAGCATTGATTCTCTCAAAGATAGATGAATGAGCC
CTTCTGATTGTGGGTGAACGATATTTGCCAAAGGGACTTTAGTAAAATCG
AAACACTCAAAACTTAATGAAGTCAGCTGATCACAACGTTTGAATAAATC
CTCTAAGTATGCTTCGGTAAGATTTTCCATGGTcttattgaaatttgatt
tcccTCGAATGTGAACAGCAACTGTATTTTTGGTCAACTTTCGTCTAGAT
ATCATCCAAAGTTGTTTCAAACTACGCGGGGAGGTTCTCATATCAAATGT
TGTGGTCAATGCATTATCCCCACATACATGATACCATCTTCGACACACTA
AGGATGCTGATACTAATGTCAGAGTATCTAAGTATTGAAAAATGTGAACT
AAAATAACATCAGGAAGCTGAGATATTATAGCCTTTTCATTTGCTTTATC
AACCTCAGCTAATGCTTTTTGCCTTTCAATCTTCTGTTTATGACTTCCag
taaacattttgtttttaatttcaattttcaatttcctgaataaagaaatt
ttaataTCA
Run BLAST on NCBI

protein sequence of TCONS_00003221-protein

>TCONS_00003221-protein ID=TCONS_00003221-protein|Name=TCONS_00003221-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp
DIKISLFRKLKIEIKNKMFTGSHKQKIERQKALAEVDKANEKAIISQLPD
VILVHIFQYLDTLTLVSASLVCRRWYHVCGDNALTTTFDMRTSPRSLKQL
WMISRRKLTKNTVAVHIRGKSNFNKTMENLTEAYLEDLFKRCDQLTSLSF
ECFDFTKVPLANIVHPQSEGLIHLSLRESMLPMKWFEGLEHGNLLPNLQT
LDLHTCSKVANNDLQAISYLKSLERLVLCNCYRISARGIPTLVTNLRSLK
HLDFSGCPGINNVALFHLAKLELTELLLRFCHLLTDYGINELFRDTSCTK
KTLRKLDLYSCHELTDKCFENVIKGNQLTDLNVGGCNKLTREKVDCFKEL
FPECVLQSGPVNSDDDQCDKDENDFHACKRMRISAH
Run BLAST on NCBI

transcript from alignment at sc0000025:251570..253028

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003221 ID=TCONS_00003221|Name=TCONS_00003221|organism=Clytia hemisphaerica|type=transcript|length=1459bp|location=Sequence derived from alignment at sc0000025:251570..253028 (Clytia hemisphaerica)
TGAtattaaaatttctttattcaggaaattgaaaattgaaattaaaaaca
aaatgtttactGGAAGTCATAAACAGAAGATTGAAAGGCAAAAAGCATTA
GCTGAGGTTGATAAAGCAAATGAAAAGGCTATAATATCTCAGCTTCCTGA
TGTTATTTTAGTTCACATTTTTCAATACTTAGATACTCTGACATTAGTAT
CAGCATCCTTAGTGTGTCGAAGATGGTATCATGTATGTGGGGATAATGCA
TTGACCACAACATTTGATATGAGAACCTCCCCGCGTAGTTTGAAACAACT
TTGGATGATATCTAGACGAAAGTTGACCAAAAATACAGTTGCTGTTCACA
TTCGAgggaaatcaaatttcaataagACCATGGAAAATCTTACCGAAGCA
TACTTAGAGGATTTATTCAAACGTTGTGATCAGCTGACTTCATTAAGTTT
TGAGTGTTTCGATTTTACTAAAGTCCCTTTGGCAAATATCGTTCACCCAC
AATCAGAAGGGCTCATTCATCTATCTTTGAGAGAATCAATGCTTCCAATG
AAATGGTTTGAAGGCTTAGAACATGGAAACTTGTTACCAAATCTGCAGAC
CTTGGATCTGCATACTTGTAGCAAAGTTGCAAATAATGATTTGCAAGCTA
TTTCTTATTTGAAGAGTTTGGAAAGGCTGGTACTGTGTAATTGTTATCGT
ATATCTGCCAGAGGAATCCCTACCTTAGTGACTAATTTGAGAAGTTTGAA
GCATTTAGATTTTTCAGGATGTCCTGGTATCAATAATGTTGCATTATTTC
ATTTAGCAAAATTGGAATTGACAGAATTATTACTCCGATTTTGTCACCTT
TTGACTGATTATGGTATAAATGAGTTATTTAGAGATACATCTTGCACCAA
AAAGACATTGAGGAAACTTGATTTGTATAGTTGTCATGAATTGACTGATA
AGTGTTTTGAGAATGTCATCAAAGGTAATCAATTAACTGATTTAAATGTC
GGTGGTTGCAATAAACTGACCAGGGAGAAAGTTGATTGTTTCAAAGAACT
TTTCCCAGAATGTGTGCTTCAGAGTGGACCTGTCAATTCAGATGATGATC
AATGTGacaaagatgaaaatgatttccATGCTTGCAAAAGAATGAGAATC
TCTGCACATTgagtttttatataagaatttgtataaataatttattttag
aatttttttgtgaattacCTAGGTGAAAGAAATTCAGTTTGTTAGTTATA
CGGGACTGAAAAAATGACCAACCCATATATTCTGTTGATCTGCTcgtaga
acaacaaatcaaatttatttcacCTTCTgttttttagaatatttaaaagt
tttgttgttAAGCCCttttttcaattgatttttaGTAAAATGCAAAATAT
TAAATGTAAtcaatttttataatttatgaATTATCACTAGAAATTGTTTT
TTAAGCACG

Coding sequence (CDS) from alignment at sc0000025:251570..253028

>TCONS_00003221 ID=TCONS_00003221|Name=TCONS_00003221|organism=Clytia hemisphaerica|type=CDS|length=1161bp|location=Sequence derived from alignment at sc0000025:251570..253028 (Clytia hemisphaerica)
GAtattaaaatttctttattcaggaaattgaaaattgaaattaaaaacaa
aatgtttactGGAAGTCATAAACAGAAGATTGAAAGGCAAAAAGCATTAG
CTGAGGTTGATAAAGCAAATGAAAAGGCTATAATATCTCAGCTTCCTGAT
GTTATTTTAGTTCACATTTTTCAATACTTAGATACTCTGACATTAGTATC
AGCATCCTTAGTGTGTCGAAGATGGTATCATGTATGTGGGGATAATGCAT
TGACCACAACATTTGATATGAGAACCTCCCCGCGTAGTTTGAAACAACTT
TGGATGATATCTAGACGAAAGTTGACCAAAAATACAGTTGCTGTTCACAT
TCGAgggaaatcaaatttcaataagACCATGGAAAATCTTACCGAAGCAT
ACTTAGAGGATTTATTCAAACGTTGTGATCAGCTGACTTCATTAAGTTTT
GAGTGTTTCGATTTTACTAAAGTCCCTTTGGCAAATATCGTTCACCCACA
ATCAGAAGGGCTCATTCATCTATCTTTGAGAGAATCAATGCTTCCAATGA
AATGGTTTGAAGGCTTAGAACATGGAAACTTGTTACCAAATCTGCAGACC
TTGGATCTGCATACTTGTAGCAAAGTTGCAAATAATGATTTGCAAGCTAT
TTCTTATTTGAAGAGTTTGGAAAGGCTGGTACTGTGTAATTGTTATCGTA
TATCTGCCAGAGGAATCCCTACCTTAGTGACTAATTTGAGAAGTTTGAAG
CATTTAGATTTTTCAGGATGTCCTGGTATCAATAATGTTGCATTATTTCA
TTTAGCAAAATTGGAATTGACAGAATTATTACTCCGATTTTGTCACCTTT
TGACTGATTATGGTATAAATGAGTTATTTAGAGATACATCTTGCACCAAA
AAGACATTGAGGAAACTTGATTTGTATAGTTGTCATGAATTGACTGATAA
GTGTTTTGAGAATGTCATCAAAGGTAATCAATTAACTGATTTAAATGTCG
GTGGTTGCAATAAACTGACCAGGGAGAAAGTTGATTGTTTCAAAGAACTT
TTCCCAGAATGTGTGCTTCAGAGTGGACCTGTCAATTCAGATGATGATCA
ATGTGacaaagatgaaaatgatttccATGCTTGCAAAAGAATGAGAATCT
CTGCACATTga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001781XLOC_001781Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003221-proteinTCONS_00003221-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003221-exon-sc0000025-1491911889:251570..253028TCONS_00003221-exon-sc0000025-1491911889:251570..253028Clytia hemisphaericaexon
TCONS_00003221-exon-sc0000025-1510915933:251570..253028TCONS_00003221-exon-sc0000025-1510915933:251570..253028Clytia hemisphaericaexon
TCONS_00003221-exon-sc0000025-1575043694:251570..253028TCONS_00003221-exon-sc0000025-1575043694:251570..253028Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:251570..253028 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.4115	14.5028	7.74472	7.07396	6.85122	5.44417	8.06424	7.99374	3.87457	6.01392	5.69348	3.06219	4.47364	4.07743	6.8011	7.54076	7.81945	9.93646	3.8317	4.54632	5.40598	5.54139	23.4306	23.4616	3.04727	4.89531	6.34357	3.98726	9.98614	11.6507
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001810F-box_dom
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00003221 vs. Swiss-Prot (Human)
Match: FXL12 (F-box/LRR-repeat protein 12 OS=Homo sapiens GN=FBXL12 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.766e-17
Identity = 55/215 (25.58%), Postives = 91/215 (42.33%), Query Frame = -2 
Query:  688 AIISQLPDVILVHIFQYLDTLTLVSASLVCRRWYHVCGDNALTTTFDMRTSPRSLKQLWMISRRKLTKNTVAVHIRGKSNFNKTMENLTEAYLEDLFKRCDQLTSLSFECFDFTKVPLANIVHPQSEGLIHLSLRESMLPMKWFEGLEHGNLLPNLQTLDLHTCSKVANNDLQAISYLKSLERLVLCNCYRISARGIPTLVTNLRSLKHLDFSGC 1332
            A + +LPD +L+ IF YL     +  S VC RW  +  D  L    D+       K +W + RR +     ++ + G          L+ A L  L ++C  L  L     D + VP+ ++       L  L L    + M W    +   +LP L+ + L       +  LQ ++  ++L  LVL   YR++  G+   +  L  L+ L+  GC
Sbjct:    2 ATLVELPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSL----PSTLRTLELHSCEISMAWLHKQQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELSYLQRLEVLGC 212
The following BLAST results are available for this feature:
BLAST of TCONS_00003221 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FXL126.766e-1725.58F-box/LRR-repeat protein 12 OS=Homo sapiens GN=FBX... [more]
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