TCONS_00003371 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003371
Unique NameTCONS_00003371
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003371 ID=TCONS_00003371|Name=TCONS_00003371|organism=Clytia hemisphaerica|type=transcript|length=244bp
CATGATACTAGCTGGTCTCTCTGCCAGTTTTTTAGAGAAGTTCTAAGAAA
TTTTACTTCCCATCGACCGGGTCGTAGGTAAAATATCTTAAATTAATGGA
TGTGAAAATTTTGCTCCGTTTATCTTTTAGACCACCTCTACATATCAAAT
ATCTGCAATTAAttcaagattgaagaattcgcaGCGCTTTTTTGGTTGCG
GTGGCCCCAAGGTGTACTGGAGATCATTTTATCTACATCATTNN
Run BLAST on NCBI

transcript from alignment at sc0000026:122766..123009

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003371 ID=TCONS_00003371|Name=TCONS_00003371|organism=Clytia hemisphaerica|type=transcript|length=244bp|location=Sequence derived from alignment at sc0000026:122766..123009 (Clytia hemisphaerica)
NNAATGATGTAGATAAAATGATCTCCAGTACACCTTGGGGCCACCGCAAC
CAAAAAAGCGCtgcgaattcttcaatcttgaaTTAATTGCAGATATTTGA
TATGTAGAGGTGGTCTAAAAGATAAACGGAGCAAAATTTTCACATCCATT
AATTTAAGATATTTTACCTACGACCCGGTCGATGGGAAGTAAAATTTCTT
AGAACTTCTCTAAAAAACTGGCAGAGAGACCAGCTAGTATCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001866XLOC_001866Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003371-exon-sc0000026-1491911889:122766..123009TCONS_00003371-exon-sc0000026-1491911889:122766..123009Clytia hemisphaericaexon
TCONS_00003371-exon-sc0000026-1510915933:122766..123009TCONS_00003371-exon-sc0000026-1510915933:122766..123009Clytia hemisphaericaexon
TCONS_00003371-exon-sc0000026-1575043694:122766..123009TCONS_00003371-exon-sc0000026-1575043694:122766..123009Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:122766..123009 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.768425	1.16046	0	0	7.49363	2.36372	15.3627	14.5018	4.74827	9.56052	3.58617	3.61809	28.443	19.5151	16.1584	127.311	7.07639	1.14053	7.20764	0	2.17715	0	1.64979	2.65096	6.53931	15.0065	1.15658	0	5.28155	13.4788
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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