TCONS_00003665 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003665
Unique NameTCONS_00003665
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length419

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003665 ID=TCONS_00003665|Name=TCONS_00003665|organism=Clytia hemisphaerica|type=transcript|length=419bp
CGAGACAACCAATTAGTTCAATCAAAAAGAAACCAAATTCTACAAGAGCC
TCAGAGAAAAACTTATCCTCGTCCGAGgaggcattttcgtcaaaaACTGC
AACATCGCGACCGaagaattcaaaaaagaaggttcattttttatcaaagg
AGTTCAAGTTAAAACAAGTCGAGGATCAAGAAAAGGAATCGACTCCAGTC
ACAGAGCTGTCGAAAAGACAATGTTTCCTGAAAGCCAGAGATCATATAAA
CGGCCAGGCGATCCAAGAAAGATTAGGGATTACCAAGAAAATCCCAAAGA
AAGAAGCatcttccttggaaaaaagagaaaaacgaACAAGCTTCATCAAA
GCTCGCGAACAAATTAACGAACAAACAAGATTCAACATTACACCTACTGC
GTTGAAAGAAGAAAACACG
Run BLAST on NCBI

transcript from alignment at sc0000030:676771..680820-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003665 ID=TCONS_00003665|Name=TCONS_00003665|organism=Clytia hemisphaerica|type=transcript|length=4050bp|location=Sequence derived from alignment at sc0000030:676771..680820- (Clytia hemisphaerica)
CGAGACAACCAATTAGTTCAATCAAAAAGAAACCAAATTCTACAAGAGCC
TCAGAGAAAAACTTATCCTCGTCCGAGGAGGCATTTTCGTCAAAAACTGC
AACATCGCGACCGAAGAATTCAAAAAAGAAGGTTCATTTTTTATCAAAGG
AGTTCAAGTTAAAACAAGTCGAGGGTAAATGACAATATCTTTGAATATCA
AGCCTAAATCTTATCAAAGGTTAAGGCGATATAGCACCGTAATAAACCGC
CTTCTTTGCTGGCTTATTTTTTCATTCTTATTCACCCAGGGGTCGTCCGT
ATAGCACGTGTGCAAAAATAAACTACGTCAATTATATGTAGATTAATAAA
CGAAATGAATTTCGTCATTCAAACAACAGACTTACGCAATTGCTTTATTC
CCCCTTCAGTGCGTATATACTATATGGATGGTCCCAGTCCCCTAATATTT
GGACTCTAACCACAGATATCTAAGCCCGAAGGGCTAGATAGGCAACTTTA
AGCTTTCTCCAGCAAAAAAAAGTGAAGCAAAAATTTGACTTTTTAAATTT
CGTGCCGATGGATAGGATCTATCATTTTAATTGTTTTCGGAGCGCGAGAT
CAAAAAACGTAGGCGGCAAACGCTATTTCACATCTCTCATACCGGTGAAA
TTGCATATTTTAGTCACGTGACTCTGGTAGGAAATCCTTCCAAAGATGAG
CTTCACTTTTTGATAAAAGCCGCAAATCTAGCCCTTCGGGCTTTACAGAT
ATCTGTGACTCTAACCCGTTGATTAGTTTGTTTCTTTTTGTTAGTGTAAT
CTCTAATTTAAGCGAAATCTTACTATCGTGTGTAACTTTTGAAATCATTT
GATATTGTTTTTAGATCAAGAAAAGGAATCGACTCCAGTCACAGAGCTGT
CGAAAAGACAATGTTTCCTGAAAGCCAGAGATCATATAAACGGCCAGGCG
ATCCAAGAAAGATTAGGGATTACCAAGAAAATCCCAAAGAAAGAAGCATC
TTCCTTGGAAAAAAGAGAAAAACGAACAAGCTTCATCAAAGCTCGCGAAC
AAATTAACGAACAAACAAGGTAAGATAGTAATGCTTGCCTTTCATGTTTG
GGATATAAGGATATAAAACTTCGCGGGAAAATTTTCATAATAATAAAATT
AAACATTCGGCTTTACAGAAAGAGGCCATTCATTTCTTATATAAATCAAA
ATGTTTATATCCATAGAAAAACTCCAATTTTCGATTTTTTTTCCGACCCC
GCACCTTATAAGCCCCCCCCCGTCTATTAGATTTGGAAAACATTTTCAGT
TGTCAAAAGAAAAGTCCTTCATTTTGCTCTACCAGTGGATACCCCTTAAA
ACCTCACTTTTTTACATCCTCTTCTAAAATATACTTTCATAAGATATTTA
GGCATCAATGACCTAATTGTAGCATTAATAACTTTGCAGCAAAAGGACTA
TTTTATAAAAAGTTATTCCAAAAAAACAATTTCTTAGGTTTTTAAGGGGT
AAATAGCTAAAATTGCATTTTTTCACGAAGCTATAAAGATTTTCTCAGCT
TTTAAAACCATATCCAGGGAAGAAATTCATAGGTAGCCTAGACTCACCAG
AACAAGTTCCAGCCCTTATTGTTTTCTCCATCAGGATATAGGGGGTACCT
TAGGGTAGGGCGTCAACAGTCATTTTTGAGGCAAAGTCAAAAAATTCAAG
ATGTAGTGTTTTTTTATGAAAATTTAACCTATTGTGAGGCATTCTGCGCA
ATTTTTAAGGTCAGAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAATGCTATATTTTGATAAA
TCTGATTCTTTTTTGCTAAAAAGCGATTTTTGAAGACGCCATTATGATTT
TTTGAAAAAAGTGAAAATCTTGAAATTCATCTTGCTTAAAGACTTTATTG
AAGACTTCCATCTCTGAAAATTTCAGACATGTGATTTAATCAGTTTAAAG
TTTATGAACTTGCAAAATTGGCCTTAAAAAGCACTTTGCTACCCAAAATT
GGCCTAAAACGGCTCGTTTAGGGCTCCAATGGGCACAATTTTCAACCCAA
TATGATTATTTTGTTGTTTCTTCATAAAGTTTAGTATAGCAAATGAAAAA
AATAAGATTTGCAATAGTTTTGACATATTTACAGGCCTGAAAAGGCCAGA
AAATGCGATTTTTTCCAATTTTTGCCTGTAGTGCGAATCAGTACCCCCAG
GGGGGTTCGGCCAATTTTGGACTTCTGACCTTAAAAATTGCGCAGAATGC
CTCACAATAGGTTAAATTTTCATAAAAAAACACTACATCTTGAATTTTCT
GACTTTGACATTTGACGCCCCACCCTAGTACCATTCTTTTTTGTAGGTTT
TAAGGGGTATCAGCGTGGTTCTAGTTACAATATTTTTGGAGGGTACTTAG
ACCGCCCGTTTATTAGGCACCTGAAAGTACACCCAGTAGATAGTTTCCAA
ATCTCGGTAATTTAAAATCTCTGGATCAGACTTAAGAAAAGTGGTACTAT
GATGATGGCACTTCTCACTCAGAGTGGTAACTTCATTTTCATAATCGGTA
TTAAATTTCTAAAAGTTAGTCATTAGTCTTGTAAAATATCTCCGACTCCG
GTAGCATTATCAATGGAAATATTTAATCTAGCCGTTTTTTCTTTAATACT
GAAAAATCAGATTCAACATTACACCTACTGCGTTGAAAGAAGAAAACACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002031XLOC_002031Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003665-exon-sc0000030-1575043694:680647..680820TCONS_00003665-exon-sc0000030-1575043694:680647..680820Clytia hemisphaericaexon
TCONS_00003665-exon-sc0000030-1575043694:679752..679956TCONS_00003665-exon-sc0000030-1575043694:679752..679956Clytia hemisphaericaexon
TCONS_00003665-exon-sc0000030-1575043694:676771..676810TCONS_00003665-exon-sc0000030-1575043694:676771..676810Clytia hemisphaericaexon
TCONS_00003665-exon-sc0000030-1510915933:680647..680820TCONS_00003665-exon-sc0000030-1510915933:680647..680820Clytia hemisphaericaexon
TCONS_00003665-exon-sc0000030-1510915933:679752..679956TCONS_00003665-exon-sc0000030-1510915933:679752..679956Clytia hemisphaericaexon
TCONS_00003665-exon-sc0000030-1510915933:676771..676810TCONS_00003665-exon-sc0000030-1510915933:676771..676810Clytia hemisphaericaexon
TCONS_00003665-exon-sc0000030-1491911889:680647..680820TCONS_00003665-exon-sc0000030-1491911889:680647..680820Clytia hemisphaericaexon
TCONS_00003665-exon-sc0000030-1491911889:679752..679956TCONS_00003665-exon-sc0000030-1491911889:679752..679956Clytia hemisphaericaexon
TCONS_00003665-exon-sc0000030-1491911889:676771..676810TCONS_00003665-exon-sc0000030-1491911889:676771..676810Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:676771..680820 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.168942	0.0516846	0	0	0.227827	0	0.269967	0.242622	0.613313	0	0.313821	0.159808	0	0.229053	0.191861	0	0	0.149162	0.179589	0.187927	0	0	0	0	42.3156	10.7054	0.231653	0	0.187512	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003665 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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